Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011529.1 Corchorus olitorius cultivar O-4 contig11562, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3351
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Found at i:934 original size:14 final size:14

Alignment explanation


    Indices: 915--945  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        905 CACCTTCCTA

                          
        915 TATGTAATATAATG
          1 TATGTAATATAATG

                          
        929 TATGTAATATAATG
          1 TATGTAATATAATG

               
        943 TAT
          1 TAT

        946 TAACAAGGCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45


Consensus pattern (14 bp):   
TATGTAATATAATG
Done.