Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011549.1 Corchorus olitorius cultivar O-4 contig11582, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 920

Length: 1534
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27


Found at i:592 original size:153 final size:151

Alignment explanation


    Indices: 187--650  Score: 614
    Period size: 152  Copynumber: 3.1  Consensus size: 151

        177 GCACATGGAG

                      *          * *                     *               *   
        187 AAAGCGAAGATGATTCAAAACATTACTAATGGGCCCCGATAGGCTAAAAATAACAAGTGTTGCAA
          1 AAAGCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAA

                        *                        *                           
        252 ATGAGCTAAAAATTTCACAGTGGACTAATCTCACCAATATGATTATAGTTAGGCCATAAACAATG
         66 ATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATG

                      *             
        317 GAAAGAAAAGTATTGA-GGTTGCC
        131 GAAAG---AGCATTGAGGGTTGCC

               **    *   *                 *              *   *             *
        340 AAATTGAAGGCGAATCAAAACAG-AACTAA-CGG-CCCGAGTAGGCCCAATATAACAAGTGTTCA
          1 AAAGCGAAGACGATTCAAAAC-GTAACTAATGGGCCCCGA-TAGGCTCAAAATAACAAGTGTTCC

                   *                                   *                     
        402 AAATGAGTTAAAAACTTCACAGTGGACTAATCTCACCAAAATGTTTATAGTTAGGCCATAAACAA
         64 AAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAA

                                     
        467 TGGAAAGATCGCATTGAGGGTTGCC
        129 TGGAAAGA--GCATTGAGGGTTGCC

                            *      *                *                        
        492 AAAGCGAAGACGATTCTAAACGTCACTAATGGGCCCCGATTGGCTCAAAATAACAAGTGTTCCAA
          1 AAAGCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAA

                               *        *                                    
        557 ATGAGCTAAAAACTTCACATTGGACTAACCTCACCAAAATGATTATAGTTAGGCCATAAACAATG
         66 ATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATG

                                 
        622 GAAAGAGCATTGAGGGTTG-C
        131 GAAAGAGCATTGAGGGTTGCC

               *     
        642 AAATCGAAG
          1 AAAGCGAAG

        651 CAATCTATCT


Statistics
Matches: 269,  Mismatches: 34, Indels: 19
        0.84            0.11        0.06

Matches are distributed among these distances:
 149    1  0.00
 150    9  0.03
 151   25  0.09
 152  117  0.43
 153  112  0.42
 154    5  0.02

ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22


Consensus pattern (151 bp):   
AAAGCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAA
ATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATG
GAAAGAGCATTGAGGGTTGCC
Done.