Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011561.1 Corchorus olitorius cultivar O-4 contig11594, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4464
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Found at i:331 original size:154 final size:155
Alignment explanation
Indices: 1--823 Score: 1248
Period size: 154 Copynumber: 5.4 Consensus size: 155
* *
1 GTTTTGAATCGTCTCCGATTTGGCAACTCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA
1 GTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA
* * *
66 TAATCATTTTGGTGAGATTAGTGCA---T-GAAGTTTTAAGCTCAATTGGAACACTTGTTATTTT
66 TAATCATTTTGGTGAGATTAGTCCACTGTAGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
*
127 GGGCCTATCGGGGCCCATTAGTGAT
131 GGGCCTATCGGGGCCCATTAGTGAC
* * * *
152 GTTTTGAAGCTTCTTCGATTTGGCAACCCTAAATGCTTTTCTTTCCATTGTTTATGGCCTAACTC
1 GTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA
* * * *
217 TAATCATTTTGGTCAGATTAGTCCATTGTAG-TGTTTTTAGCGCATTTGGAACACTTGTTATTTT
66 TAATCATTTTGGTGAGATTAGTCCACTGTAGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
** * *
281 CAGCCTATTGGGGCCCTTTAGTGAC
131 GGGCCTATCGGGGCCCATTAGTGAC
* * *
306 GTTTTGAATCGTCTTCGATTGGGCAAACCTCAATGCTTTTCTTTCCATCGTTTATGGCCTAACTA
1 GTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA
* **
371 TAATTATTTTGGTGAGATTAGTCCACTG-AGAAGTTTTTAATTCATTTGGAACACTTGTTATTTT
66 TAATCATTTTGGTGAGATTAGTCCACTGTAGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
* * *
435 GGGCCTATTGGGGCCCATTAGTAAG
131 GGGCCTATCGGGGCCCATTAGTGAC
*
460 GTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTATTTCCATTGTTTATGGCCTAACTA
1 GTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA
*
525 TAATCATTTTGGTGAGATTAGTCCACTGT-GAAGTTCTTAGCTCATTTGGAACACTTGTTATTTT
66 TAATCATTTTGGTGAGATTAGTCCACTGTAGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
589 GGGCCTATCGGGGCCCATTAGTGAC
131 GGGCCTATCGGGGCCCATTAGTGAC
* * *
614 GTTTTGAATCGTCTTCGATTAGGCAAACCTCAATGTTTTTCTTTCCATTGTTTATGGCCTAACTA
1 GTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA
* *
679 TAATTATTTTGGTGAGATTAGTCCAATGT-GAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
66 TAATCATTTTGGTGAGATTAGTCCACTGTAGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
* *
743 GAGCCTATCGGGGCCCATTAGTGAT
131 GGGCCTATCGGGGCCCATTAGTGAC
* *
768 GTTTTGAATCGTCTTCGCTTTGGCAACCCTCAATGCTTTTCTTGCCATTGTTTATG
1 GTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATG
824 TGATGCGCCA
Statistics
Matches: 605, Mismatches: 61, Indels: 9
0.90 0.09 0.01
Matches are distributed among these distances:
151 82 0.14
153 2 0.00
154 520 0.86
155 1 0.00
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (155 bp):
GTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA
TAATCATTTTGGTGAGATTAGTCCACTGTAGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
GGGCCTATCGGGGCCCATTAGTGAC
Found at i:954 original size:21 final size:21
Alignment explanation
Indices: 928--1082 Score: 208
Period size: 21 Copynumber: 7.4 Consensus size: 21
918 TGCTAGAAGT
928 TCATTGGAGCAA-GTTCCAAGC
1 TCATTGGAG-AAGGTTCCAAGC
*
949 TCATTGGAGCAA-GTTCCAATC
1 TCATTGGAG-AAGGTTCCAAGC
970 TCATTGGAGCAA-GTTCCAAGC
1 TCATTGGAG-AAGGTTCCAAGC
*
991 TCATTGGAGAAGGTTCCAAGT
1 TCATTGGAGAAGGTTCCAAGC
* *
1012 TCATTGGAAAAGGTTCCAAGT
1 TCATTGGAGAAGGTTCCAAGC
*
1033 TCATTGGAGAAGGTTCCAAGA
1 TCATTGGAGAAGGTTCCAAGC
*
1054 TCATTGGAGAAGGTTTCAAGC
1 TCATTGGAGAAGGTTCCAAGC
1075 TCATTGGA
1 TCATTGGA
1083 ATTGCCTAGG
Statistics
Matches: 125, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
20 2 0.02
21 123 0.98
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (21 bp):
TCATTGGAGAAGGTTCCAAGC
Found at i:1916 original size:154 final size:154
Alignment explanation
Indices: 1636--4458 Score: 3826
Period size: 154 Copynumber: 18.4 Consensus size: 154
1626 ATACAACTAG
** * *
1636 ATTTTGGTGAGATTAAACCAATGTGAGGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* * *
1701 ATCGGGGCCCATTAGTTCCGTTTTGATTCGTCTCCGATTTGGCAACCCTCAATGCCTTTCTTTCC
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
* *
1766 ATTGTTTATGGGCTAATTATAATC
131 ATTGTTTATGGCCTAACTATAATC
*
1790 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGAGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* *** * *
1855 ATCGGGGTCCATTAGTGATGTTTTGAATCGTCTTAGCTTTGGCAACCCTCAATGCTTTTCTTTCC
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
1920 ATTGTTTATGGCCTAACTATAATC
131 ATTGTTTATGGCCTAACTATAATC
* * *
1944 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAACTCATTTGGATCACTTGTTATTTTGGACCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* * ** * * * *
2009 ATTGGGACCCATTAGTGACGTTTTGAATCATCTTCGATTTGGCAAACCACAATGGTTTTCTTTCC
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
* *
2074 ACTGTTAATGGCCTAACTATAATC
131 ATTGTTTATGGCCTAACTATAATC
* * *
2098 CTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGTTCATTTGGGACACTTGTTATTTTGGGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* * * * *
2163 TTCGGGGCCCATTAGTTCTGTTTTGAATCGTCTTCAATTTGCCAAACCC-CAATGCTTTTTTTTT
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC-AACCCTCAATGC-TTTTCTTT
*
2227 CAATTGTTTGTTTATGGCCTAACTATAATC
129 CCA----TTGTTTATGGCCTAACTATAATC
2257 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* * * *
2322 TTCGGGGCCCATTAGTTTCGTTTTGAATCGAT-TTCGATTTGACAAACCTCAGA-GCTATTT-TT
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCG-TCTTCGATTTGGCAACCCTCA-ATGCT-TTTCTT
* *
2384 TCCATTGTTAATGGTCTAACTATAATC
128 TCCATTGTTTATGGCCTAACTATAATC
* *
2411 ATTTTGGTGAGA-TATGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTGTAATTTTGGGCC
1 ATTTTGGTGAGATTA-GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCC
* * * ** * * *
2475 TTTTGGGGCCCATTAGATCCGTTTTGAATCAACTTTGATTTGGCAAACCTCAAAGC---T-TTT-
65 TATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTC
2535 C-----TT-T--CCTAACTATAATC
130 CATTGTTTATGGCCTAACTATAATC
* *
2552 ATTTTCGTGAGA-TATGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGCTATTTTGGGCC
1 ATTTTGGTGAGATTA-GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCC
* * * * * * *
2616 TTTCGGAGCCCTTTAGTTCTGTTTTGAATAC-TCTTCGATTTGGCAAACCTCAATTCTTTTTTTT
65 TATCGGGGCCCATTAGTTCCGTTTTGAAT-CGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTT
*
2680 CCAATGTTTATGGCCTAACTATAATC
129 CCATTGTTTATGGCCTAACTATAATC
* *
2706 ATTTAGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGGACACTTGTTATTTTGGGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* * ** * * *
2771 TTCGAGGCCCATTAGTTTTGTTTTGAATCGTCTTCAATTTGCCAAACCC-CAATGCCTTTTTTTT
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC-AACCCTCAATG-C--TTTTCT
* *
2835 TTCAATTGTTTAAGGCCTAACTATAATC
127 TTCCATTGTTTATGGCCTAACTATAATC
* *
2863 ACTTTGGTTAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* * * *
2928 TTCGAGGCCCATTAATTCTGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
*
2993 ATTGTTTATGGCATAACTATAATC
131 ATTGTTTATGGCCTAACTATAATC
* *
3017 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTTGCTAATTTGGAACACTTGTTATTTTGGGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* * *
3082 TTCGGGGCCCATTAGTTCCGTTTTGAATAGTCTTCGATTTGGCAACCCTCAATGCTTTTCATTCC
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
* *
3147 AATGTTTACGGCCTAACTATAATC
131 ATTGTTTATGGCCTAACTATAATC
* * * *
3171 ATTTTGGTGAGATTAGTCCACTGTGAAGATTTTAGCTAATTTGGAACACTTGTTATTTGGGGTCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* *
3236 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCATCGATTTGGCAACCCTCAATGCTTTTCTTTTC
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
*
3301 ATTGTTTATGGCTTAACTATAATC
131 ATTGTTTATGGCCTAACTATAATC
* * * * * * *
3325 ATGTTGGTGAGATTAGTCCACTATAAAGGTTTTAGCTAATTTTGTACACTTGTTATTTTGGGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* ** * * *
3390 ATCGGCGCTTATTAGTTCCGTTTTGAGTCGTCTTTGATTTGGCAACCCTCAATGCTTTTCGTTCC
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
*
3455 ATTGTTTATGGCCTCA-TATAATC
131 ATTGTTTATGGCCTAACTATAATC
*
3478 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* * ** **
3543 ATAGGGGCCCATTACTGACGAATTGAATCGTCTTCGATTTGGCAACCCTCAATGC-TTTCTTTCC
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
3607 ATTGTTTATGGCCTAACTATAATC
131 ATTGTTTATGGCCTAACTATAATC
*
3631 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTTGAACACTTGTTATTTTGGGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* * * * * *
3696 AACGGGGCCCATAAGTTCCGTTTTGATTCTTCTTCGATTTGGCAACCATCAATGCCTTTCTTTCC
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
3761 ATTGTTTATGG--TAACTATAATC
131 ATTGTTTATGGCCTAACTATAATC
* *
3783 ATTTTGCTGAGATTAGTCCTCTGTGAAGTTTTTAGCTCATTTGGAACACATT-TTATTTTGGGCC
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAC-TTGTTATTTTGGGCC
* ** * ** *
3847 TATCTGGGCCCATTAGTTCTTTTTTGAATCGTCTTCGATTAGGCAAAGCTCAATGTTTTTCTTTC
65 TATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTC
*
3912 CATTGTTTATGGCCTAACTATAATT
130 CATTGTTTATGGCCTAACTATAATC
* * * *
3937 ATTTTGGTGAAATTAGTCCAATGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATATTGAGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* ** *** *
4002 ATTGGAACCCATTAGTGAAGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCCTTTCTTTCC
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
* *
4067 ATTGTTCATGGCCTAATTATAATC
131 ATTGTTTATGGCCTAACTATAATC
4091 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* * *
4156 ATCGGGGCCCATTAGTTCCGTTTTGATTCGTCTCCGATTTGGCAACCCTCAATGCCTTTCTTTCC
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
*
4221 ATTGTTTATGGGCTAACTATAATC
131 ATTGTTTATGGCCTAACTATAATC
* * *
4245 ATTTTGGTGAGATTTGTCCAATGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGAGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* * ** * * *
4310 ATTGGGGCCTATTAGTGACGTTCTGAATCGTCTTCGCTTTGGCAACCCTCAATGCCTTTCTTTCC
66 ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
*
4375 ATTGTTTATGGGCTAACTATAATC
131 ATTGTTTATGGCCTAACTATAATC
* * *
4399 ATTTTGCTGAGATTAGTGCTCTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTG
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTG
4459 AGACTA
Statistics
Matches: 2368, Mismatches: 261, Indels: 80
0.87 0.10 0.03
Matches are distributed among these distances:
141 117 0.05
142 1 0.00
143 1 0.00
144 2 0.00
145 3 0.00
146 1 0.00
149 1 0.00
150 4 0.00
151 2 0.00
152 157 0.07
153 230 0.10
154 1548 0.65
155 20 0.01
156 6 0.00
157 136 0.06
158 10 0.00
159 127 0.05
160 2 0.00
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (154 bp):
ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
ATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCC
ATTGTTTATGGCCTAACTATAATC
Found at i:4016 original size:920 final size:917
Alignment explanation
Indices: 1636--4458 Score: 3842
Period size: 920 Copynumber: 3.1 Consensus size: 917
1626 ATACAACTAG
** * *
1636 ATTTTGGTGAGATTAAACCAATGTGAGGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* * *
1701 ATCGGGGCCCATTAGTTCCGTTTTGATTCGTCTCCGATTTGGCAACCCTCAATGCCTTTCTTTCC
66 ATCGGGGCCCATTAG-TACGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATG-CTTTCTTTCC
* *
1766 ATTGTTTATGGGCTAATTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATT
129 ATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATT
* * * * *
1831 TGGAACACTTGTTATTTTGAGCCTATCGGGGTCCATTAGTGATGTTTTGAATCGTCTTAGCTTTG
194 TGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTATGTTTTGAATCGTCTTCGATTTG
*
1896 GCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGT
259 GCAA-CCTCAATGCCTTTCTTTCCATTGTTTATGG-CTAACTATAATCATTTTGGTGAGATTAGT
* * *
1961 CCACTGTGAAGTTTTTAACTCATTTGGATCACTTGTTATTTTGGACCTAT-TGGGACCCATTAGT
322 CCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCTGGG-CCCATTAGT
* * * * * *
2025 GAC-GTTTTGAATCATCTTCGATTTGGCAAACCACAATGGTTTTCTTTCCACTGTTAATGGCCTA
386 -TCTGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
* * *
2089 ACTATAATCCTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGTTCATTTGGGACACTTGTTAT
450 ACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTAT
* * *
2154 TTTGGGCCTTTCGGGGCCCATTAGTTCTGTTTTGAATCGTCTTCAATTTGCCAAACCC-CAATGC
515 TTTGGGCCTTTCGGGGCCCATTAGTTCAGTTTTGAATCGTCTTCGATTTGGC-AACCCTCAATGC
* *
2218 TTTTTTTTTCAATTGTTTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGA
579 TTTTCTTTCCAA-----TGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGA
* *
2283 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTTCGTTTTGA
639 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGA
* * * *
2348 ATCGATTTCGATTTGACAAACCTCAGA-GCTATTT-TTTCCATTGTTAATGG-TCTAACTATAAT
704 ATCG-TCTCGATTTGGCAACCCTCA-ATGCT-TTTCTTTCCATTGTTTATGGCT-TAACTATAAT
* *
2410 CATTTTGGTGAGA-TATGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTGTAATTTTGGGC
765 CATTTTGGTGAGATTA-GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* * * ** * *
2474 CTTTTGGGGCCCATTAGATCCGTTTTGAATCAACTTTGATTTGGCAAACCTCAAAGCTTTTCTTT
829 CTATTGGGGCCTATTAGTTCCGTTTTGAATCGTCTTTGATTTGGCAACCCTCAATGCTTTTCTTT
*
2539 CC------TA----AC-TATAATC
894 CCATTGTTTATGGCTCATATAATC
* *
2552 ATTTTCGTGAGA-TATGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGCTATTTTGGGCC
1 ATTTTGGTGAGATTA-GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCC
* * * * * * *
2616 TTTCGGAGCCCTTTAGTTCTGTTTTGAATAC-TCTTCGATTTGGCAAACCTCAATTCTTTTTTTT
65 TATCGGGGCCCATTAGTAC-GTTTTGAAT-CGTCTTCGATTTGGCAACCCTCAATGC-TTTCTTT
* *
2680 CCAATGTTTATGGCCTAACTATAATCATTTAGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
127 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
* * * * *
2745 TTTGGGACACTTGTTATTTTGGGCCTTTCGAGGCCCATTAGTTTTGTTTTGAATCGTCTTCAATT
192 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTATGTTTTGAATCGTCTTCGATT
* * * * * * *
2810 TGCCAAACCCCAATGCCTTTTTTTTTTCAATTGTTTAAGGCCTAACTATAATCACTTTGGTTAGA
257 TGGC-AACCTCAATGCC---TTTCTTTCCATTGTTTATGG-CTAACTATAATCATTTTGGTGAGA
*
2875 TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTC-GAGGCCCA
317 TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCTG-GGCCCA
* *
2939 TTAATTCTGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGG
381 TTAGTTCTGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGG
* * *
3004 CATAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTTGCTAATTTGGAACACTTG
446 CCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTG
* *
3069 TTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATAGTCTTCGATTTGGCAACCCTCAA
511 TTATTTTGGGCCTTTCGGGGCCCATTAGTTCAGTTTTGAATCGTCTTCGATTTGGCAACCCTCAA
* *
3134 TGCTTTTCATTCCAATGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAG
576 TGCTTTTCTTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAG
* * * *
3199 ATTTTAGCTAATTTGGAACACTTGTTATTTGGGGTCTATCGGGGCCCATTAGTTCCGTTTTGAAT
641 TTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAAT
* *
3264 CGTCATCGATTTGGCAACCCTCAATGCTTTTCTTTTCATTGTTTATGGCTTAACTATAATCATGT
706 CGTC-TCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCTTAACTATAATCATTT
* * * * * * *
3329 TGGTGAGATTAGTCCACTATAAAGGTTTTAGCTAATTTTGTACACTTGTTATTTTGGGCCTATCG
770 TGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTG
* * * *
3394 GCGCTTATTAGTTCCGTTTTGAGTCGTCTTTGATTTGGCAACCCTCAATGCTTTTCGTTCCATTG
835 GGGCCTATTAGTTCCGTTTTGAATCGTCTTTGATTTGGCAACCCTCAATGCTTTTCTTTCCATTG
3459 TTTATGGCCTCATATAATC
900 TTTATGG-CTCATATAATC
*
3478 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCT
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* * **
3543 ATAGGGGCCCATTACTGACGAATTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTCTTTCCA
66 ATCGGGGCCCATTAGT-ACGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTCTTTCCA
3608 TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT
130 TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT
* * * ** * *
3673 TGAACACTTGTTATTTTGGGCCTAACGGGGCCCATAAGTTCCGTTTTGATTCTTCTTCGATTTGG
195 GGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTATGTTTTGAATCGTCTTCGATTTGG
*
3738 CAACCATCAATGCCTTTCTTTCCATTGTTTATGG-TAACTATAATCATTTTGCTGAGATTAGTCC
260 CAACC-TCAATGCCTTTCTTTCCATTGTTTATGGCTAACTATAATCATTTTGGTGAGATTAGTCC
*
3802 TCTGTGAAGTTTTTAGCTCATTTGGAACACATT-TTATTTTGGGCCTATCTGGGCCCATTAGTTC
324 ACTGTGAAGTTTTTAGCTCATTTGGAACAC-TTGTTATTTTGGGCCTATCTGGGCCCATTAGTTC
* * * *
3866 TTTTTTGAATCGTCTTCGATTAGGCAAAGCTCAATGTTTTTCTTTCCATTGTTTATGGCCTAACT
388 TGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT
* * * *
3931 ATAATTATTTTGGTGAAATTAGTCCAATGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATATT
453 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
* ** ** *
3996 GAGCCTATT-GGAACCCATTAGTGAAGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCCTT
518 GGGCCT-TTCGGGGCCCATTAGTTCAGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTT
* * *
4060 TCTTTCCATTGTTCATGGCCTAATTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTA
582 TCTTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTA
*
4125 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGATTCGTCTC
647 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCT-
*
4190 CGATTTGGCAACCCTCAATGCCTTTCTTTCCATTGTTTATGGGC-TAACTATAATCATTTTGGTG
711 CGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTAT-GGCTTAACTATAATCATTTTGGTG
* * *
4254 AGATTTGTCCAATGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGAGCCTATTGGGGCC
775 AGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGCC
** * * * *
4319 TATTAGTGACGTTCTGAATCGTCTTCGCTTTGGCAACCCTCAATGCCTTTCTTTCCATTGTTTAT
840 TATTAGTTCCGTTTTGAATCGTCTTTGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTAT
*
4384 GGGCTAACTATAATC
905 -GGCTCA-TATAATC
* * *
4399 ATTTTGCTGAGATTAGTGCTCTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTG
1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTG
4459 AGACTA
Statistics
Matches: 1675, Mismatches: 192, Indels: 75
0.86 0.10 0.04
Matches are distributed among these distances:
913 5 0.00
914 260 0.16
915 8 0.00
916 230 0.14
917 3 0.00
918 6 0.00
919 278 0.17
920 546 0.33
921 73 0.04
922 17 0.01
924 4 0.00
925 135 0.08
926 107 0.06
927 3 0.00
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (917 bp):
ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
ATCGGGGCCCATTAGTACGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTCTTTCCAT
TGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG
GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTATGTTTTGAATCGTCTTCGATTTGGC
AACCTCAATGCCTTTCTTTCCATTGTTTATGGCTAACTATAATCATTTTGGTGAGATTAGTCCAC
TGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCTGGGCCCATTAGTTCTGT
TTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATA
ATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGG
CCTTTCGGGGCCCATTAGTTCAGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTT
TCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTCGATT
TGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCTTAACTATAATCATTTTGGTGAGATTA
GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGCCTATTAG
TTCCGTTTTGAATCGTCTTTGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCTCA
TATAATC
Done.