Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011562.1 Corchorus olitorius cultivar O-4 contig11595, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4571
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27


Found at i:59 original size:22 final size:22

Alignment explanation


    Indices: 31--75  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

         21 GAACTGTCTG

                                  
         31 AAAGAGCTGAACCTATAGGCAA
          1 AAAGAGCTGAACCTATAGGCAA

                                  
         53 AAAGAGCTGAACCTATAGGCAA
          1 AAAGAGCTGAACCTATAGGCAA

             
         75 A
          1 A

         76 GTTGCATAGC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.47, C:0.18, G:0.22, T:0.13


Consensus pattern (22 bp):   
AAAGAGCTGAACCTATAGGCAA
Done.