Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011563.1 Corchorus olitorius cultivar O-4 contig11596, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5107
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30


Found at i:1594 original size:22 final size:22

Alignment explanation


    Indices: 1566--1609  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1556 AGCTTACAGG

                                  
       1566 AATAAAGCTAGTTGTTCATTCA
          1 AATAAAGCTAGTTGTTCATTCA

                                  
       1588 AATAAAGCTAGTTGTTCATTCA
          1 AATAAAGCTAGTTGTTCATTCA

       1610 CTTGATGCCA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36


Consensus pattern (22 bp):   
AATAAAGCTAGTTGTTCATTCA

Found at i:3121 original size:20 final size:21

Alignment explanation


    Indices: 3096--3134  Score: 62
    Period size: 20  Copynumber: 1.9  Consensus size: 21

       3086 AATAAGAGCC

                                 
       3096 TGCTTGTTCAG-CTTTTCTTT
          1 TGCTTGTTCAGACTTTTCTTT

                    *          
       3116 TGCTTGTTGAGACTTTTCT
          1 TGCTTGTTCAGACTTTTCT

       3135 GATTTTGCAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20   10  0.59
  21    7  0.41

ACGTcount: A:0.08, C:0.18, G:0.18, T:0.56


Consensus pattern (21 bp):   
TGCTTGTTCAGACTTTTCTTT

Done.