Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011570.1 Corchorus olitorius cultivar O-4 contig11603, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 790

Length: 1318
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35


Found at i:1316 original size:156 final size:156

Alignment explanation


    Indices: 596--1318  Score: 1221
    Period size: 156  Copynumber: 4.6  Consensus size: 156

        586 TTGGCGCATC

                              *  *                     *                     
        596 ACTAACTATAATCATTTTTGTTAGACTAGTCCATTGTGAAGTTTTTAGCTCATTTTGAACACTTG
          1 ACTAACTATAATCATTTTGGTAAGACTAGTCCATTGTGAAGTTCTTAGCTCATTTTGAACACTTG

                                                                          * *
        661 TTATTTTGGACCATTCGGGGCCCATTAGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACCAT
         66 TTATTTTGGACCATTCGGGGCCCATTAGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACAAC

                                      
        726 AATGCTTTTCTTTCCATTGTTTATGG
        131 AATGCTTTTCTTTCCATTGTTTATGG

            *        *    *          *           *                           
        752 CCTAACTATGATCACTTTGGTAAGATTAGTCCATTGTAAAGTTCTTAGCTCATTTTGAACACTTG
          1 ACTAACTATAATCATTTTGGTAAGACTAGTCCATTGTGAAGTTCTTAGCTCATTTTGAACACTTG

                                          *                    *             
        817 TTATTTTGGACCATTCGGGGCCCATTAGTTAGGTTTTAAAAATCGTCTTCGGTTTGGCAAACAAC
         66 TTATTTTGGACCATTCGGGGCCCATTAGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACAAC

                                      
        882 AATGCTTTTCTTTCCATTGTTTATGG
        131 AATGCTTTTCTTTCCATTGTTTATGG

                             *                             *                 
        908 ACTAACTATAATCATTTAGGTAAGACTAGTCCATTGTGAAGTTCTTAACTCATTTTGAACACTTG
          1 ACTAACTATAATCATTTTGGTAAGACTAGTCCATTGTGAAGTTCTTAGCTCATTTTGAACACTTG

                     *                    **            *      *             
        973 TTATTTTGGGCCATTCGGGGCCCATTAGTTAAGTTTTAAAAATCATCTTCGGTTTGGCAAACAAC
         66 TTATTTTGGACCATTCGGGGCCCATTAGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACAAC

                                      
       1038 AATGCTTTTCTTTCCATTGTTTATGG
        131 AATGCTTTTCTTTCCATTGTTTATGG

                                                                    *        
       1064 ACTAACTATAATCATTTTGGTAAGACTAGTCCATTGTGAAGTTCTTAGCTCATTTTAAACACTTG
          1 ACTAACTATAATCATTTTGGTAAGACTAGTCCATTGTGAAGTTCTTAGCTCATTTTGAACACTTG

                                                                             
       1129 TTATTTTGGACCATTCGGGGCCCATTAGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACAAC
         66 TTATTTTGGACCATTCGGGGCCCATTAGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACAAC

                            *         
       1194 AATGCTTTTCTTTCCAATGTTTATGG
        131 AATGCTTTTCTTTCCATTGTTTATGG

            *         *                                                      
       1220 CCTAACTATAGTCATTTTGGTAAGACTAGTCCATTGTGAAGTTCTTAGCTCATTTTGAACACTTG
          1 ACTAACTATAATCATTTTGGTAAGACTAGTCCATTGTGAAGTTCTTAGCTCATTTTGAACACTTG

                            *         *       
       1285 TTATTTTGGACCATTCAGGGCCCATTTGTTCGGT
         66 TTATTTTGGACCATTCGGGGCCCATTAGTTCGGT


Statistics
Matches: 531,  Mismatches: 36, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
 156  531  1.00

ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40


Consensus pattern (156 bp):   
ACTAACTATAATCATTTTGGTAAGACTAGTCCATTGTGAAGTTCTTAGCTCATTTTGAACACTTG
TTATTTTGGACCATTCGGGGCCCATTAGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACAAC
AATGCTTTTCTTTCCATTGTTTATGG
Done.