Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011588.1 Corchorus olitorius cultivar O-4 contig11621, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3880
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28


Found at i:1521 original size:14 final size:14

Alignment explanation


    Indices: 1502--1543  Score: 84
    Period size: 14  Copynumber: 3.0  Consensus size: 14

       1492 AAGAGAGAAA

                          
       1502 AAAGGGATACATCC
          1 AAAGGGATACATCC

                          
       1516 AAAGGGATACATCC
          1 AAAGGGATACATCC

                          
       1530 AAAGGGATACATCC
          1 AAAGGGATACATCC

       1544 TTAGATAGAC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   28  1.00

ACGTcount: A:0.43, C:0.21, G:0.21, T:0.14


Consensus pattern (14 bp):   
AAAGGGATACATCC
Done.