Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011593.1 Corchorus olitorius cultivar O-4 contig11626, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3957
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28


Found at i:2166 original size:18 final size:18

Alignment explanation


    Indices: 2145--2181  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       2135 AAAATACCAA

                     *        
       2145 GCTTATCAGCAATAGTTT
          1 GCTTATCAGAAATAGTTT

                              
       2163 GCTTATCAGAAATAGTTT
          1 GCTTATCAGAAATAGTTT

             
       2181 G
          1 G

       2182 GTGATGGGCT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.30, C:0.14, G:0.19, T:0.38


Consensus pattern (18 bp):   
GCTTATCAGAAATAGTTT
Done.