Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000116.1 Corchorus olitorius cultivar O-4 contig00116, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 936

Length: 1561
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.33


Found at i:907 original size:34 final size:32

Alignment explanation


    Indices: 868--939  Score: 81
    Period size: 32  Copynumber: 2.2  Consensus size: 32

        858 AATCAAATTC

                             *                
        868 AGCTTTCAGTACGAAAGTCGTAAATTACACAATA
          1 AGCTTTCAGTACG--AGCCGTAAATTACACAATA

                  * *  * *                  
        902 AGCTTTTATTATGCGCCGTAAATTACACAATA
          1 AGCTTTCAGTACGAGCCGTAAATTACACAATA

                  
        934 AGCTTT
          1 AGCTTT

        940 TATTATGCGC


Statistics
Matches: 33,  Mismatches: 5, Indels: 2
        0.82            0.12        0.05

Matches are distributed among these distances:
  32   23  0.70
  34   10  0.30

ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32


Consensus pattern (32 bp):   
AGCTTTCAGTACGAGCCGTAAATTACACAATA

Found at i:923 original size:32 final size:32

Alignment explanation


    Indices: 886--950  Score: 130
    Period size: 32  Copynumber: 2.0  Consensus size: 32

        876 GTACGAAAGT

                                            
        886 CGTAAATTACACAATAAGCTTTTATTATGCGC
          1 CGTAAATTACACAATAAGCTTTTATTATGCGC

                                            
        918 CGTAAATTACACAATAAGCTTTTATTATGCGC
          1 CGTAAATTACACAATAAGCTTTTATTATGCGC

             
        950 C
          1 C

        951 TCAGCCTGGT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   33  1.00

ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34


Consensus pattern (32 bp):   
CGTAAATTACACAATAAGCTTTTATTATGCGC
Done.