Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011600.1 Corchorus olitorius cultivar O-4 contig11633, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7404
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Found at i:281 original size:154 final size:153
Alignment explanation
Indices: 1--2132 Score: 3048
Period size: 154 Copynumber: 13.8 Consensus size: 153
* *
1 AAAATGATTATAGTTAGGCCGTAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * *
66 GATTCAAAACAACACTAATGGGCCCCCATAGGCCCAAAATAACAAGTGATCCAAATGAGCTAAAA
66 GATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
131 ACTTCACAGTGGACTAATCTCACC
130 ACTTCACAGTGGACTAATCTCACC
* *
155 AAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAAAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* *
220 GATTCAAAACAGAACTAATGCGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
66 GATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
285 ACTTCACAGTGGACTAATCTCACC
130 ACTTCACAGTGGACTAATCTCACC
*
309 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
374 GATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
66 GATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
*
439 ACTTCACAGTGGACTAATTTCACC
130 ACTTCACAGTGGACTAATCTCACC
* * *
463 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGATGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * ** * *
528 GATTCAAAACGTCACTAAAGGGCCTTGATACGCCCAAAATAACCAGTGTTCCAAATGAGCTAAAA
66 GATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
593 ACTTCACAGTGGACTAATCTCACC
130 ACTTCACAGTGGACTAATCTCACC
617 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * * **
682 GATTCAAAACGGAACTAATGGGCCCCGAAAGACCTAAAATAACAAGTGTTCCAAATGAGCTATTA
66 GATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
*
747 ACTTTACAGTGGACTAATCTCACC
130 ACTTCACAGTGGACTAATCTCACC
* * * * *
771 AAAATAATTATAGTTAGGCAATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* *
836 GATTCAAAATGACACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAGATGAGCTAAAA
66 GATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
* * *
901 ACGTCACAGTGGACTAATTTGACC
130 ACTTCACAGTGGACTAATCTCACC
* *
925 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAGAGGACATCGAAGGTTGCCAAATCGAAG
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA-AAG-CATCGAGGGTTGCCAAATCGAAG
* *
990 ACGATTCAAAACGTCACTAATGGTCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
64 ACGATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
* *
1055 GAA-TTGAACAGTGGACTAATCTCACC
128 AAACTT-CACAGTGGACTAATCTCACC
* * *
1081 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAGGCATCGAAGGTTGCCAAATCAAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * * * *
1146 GATTCAAAACGTCACTAGTGGTCCCCGATAGGCCCAAAATAACAAGTTTTCCAATTGAGCTAAAA
66 GATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
1211 ACTTCACAGTGGACTAATCTCACC
130 ACTTCACAGTGGACTAATCTCACC
** * * * *
1235 AAAATGATTATAAATAGGACATAAACAATGGAAAAAAAAGCATTGAGGTTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * * * *
1300 GATTCAAAACGTCACTAATGGTTCGCCGATAGGCCTAAAATAACAAGTGTTCCAAATGAGGTAAA
66 GATTCAAAACG-AACTAATGG-GCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
1365 AACTTCACAGTGGACTAATCTCACC
129 AACTTCACAGTGGACTAATCTCACC
* * * *
1390 -AAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGATGTTTCCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * * * *
1454 GATTCAGAACAGCACTAAGGGGCCCCGATAGGCCCAAAATAACAAGTATTTCAAATGAGCTAAAA
66 GATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
*
1519 ACTTCACAGTGGACTAATCTCAAC
130 ACTTCACAGTGGACTAATCTCACC
* * * * * * *
1543 AAAATGATTATACTTAGGCCCTAAACAATGGAAAGAAAAACATTGATGTTTCCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * * * ** * *
1608 GATTCAGAACAATACTAATGGGCCCCGTTAGGCCAAAAATAACAAGAATTTCAAATGAGCTAATA
66 GATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
*
1673 ACTTCACAGTGGACTAATCTCAAC
130 ACTTCACAGTGGACTAATCTCACC
* *
1697 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * * ** *
1762 GATTCAAAACGTCACTACTAGGCCTTGATAGGCCCCAAATAACAAGTGTTCCAAATGAGCTAAAA
66 GATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
* **
1827 ACTTCATAGTGTTCTAATCTCACC
130 ACTTCACAGTGGACTAATCTCACC
* ** *
1851 GAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATAAAAAAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * * * * *
1916 GATTCAAAAC-ATAGCTAATGGGCCCTGAAAGTCCTAAAATAACATGTGTTCGAAATGAGCTAAA
66 GATTCAAAACGA-A-CTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
1980 AACTTCACAGTGGACTAATCTCACC
129 AACTTCACAGTGGACTAATCTCACC
* * *
2005 AAAATGATCATAGTTAGGCCATAAACAATGGAAAGAAAAGCA-CTGAGGTTTCCCAAATCGAAGA
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATC-GAGGGTTGCCAAATCGAAGA
*
2069 CGATTCAAAACGACACTTATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
65 CGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
2133 TGATACGAAT
Statistics
Matches: 1781, Mismatches: 179, Indels: 36
0.89 0.09 0.02
Matches are distributed among these distances:
153 66 0.04
154 1504 0.84
155 76 0.04
156 135 0.08
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (153 bp):
AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
GATTCAAAACGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAA
CTTCACAGTGGACTAATCTCACC
Found at i:565 original size:308 final size:308
Alignment explanation
Indices: 1--7399 Score: 9103
Period size: 308 Copynumber: 24.0 Consensus size: 308
* *
1 AAAATGATTATAGTTAGGCCGTAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * *
66 GATTCAAAAC-AACACTAATGGGCCCCCATAGGCCCAAAATAACAAGTGATCCAAATGAGCTAAA
66 GATTCAAAACGGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
*
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAG
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * *
195 CATCGAGGGTTGCCAAATCGAAAACGATTCAAAACAG-AACTAATGCGCCCCGAAAGGCCCAAAA
195 CATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GTCACTAATGGGCCCCGATAGGCCCAAAA
259 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
259 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
*
309 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
374 GATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
66 GATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
*
439 ACTTCACAGTGGACTAATTTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
* * ** *
504 ATTGAGGTTTGCCAAATCGATGACGATTCAAAACGTCACTAAAGGGCCTTGATACGCCCAAAATA
196 ATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATA
*
569 ACCAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
261 ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
617 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * * **
682 GATTCAAAACGGAACTAATGGGCCCCGAAAGACCTAAAATAACAAGTGTTCCAAATGAGCTATTA
66 GATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
* * *
747 ACTTTACAGTGGACTAATCTCACCAAAATAATTATAGTTAGGCAATAAACAATGGAAAGAAAAGC
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
* * *
812 ATTGAGGTTTCCCAAATCGAAGACGATTCAAAATGACACTAATGGGCCCCGATAGGCCCAAAATA
196 ATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATA
* * * *
877 ACAAGTGTTCCAGATGAGCTAAAAACGTCACAGTGGACTAATTTGACC
261 ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* *
925 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAGAGGACATCGAAGGTTGCCAAATCGAAG
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA-AAG-CATCGAGGGTTGCCAAATCGAAG
** *
990 ACGATTCAAAACGTCACTAATGGTCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
64 ACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
* *
1055 GAA-TTGAACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
129 AAACTT-CACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
* * * * *
1119 GGCATCGAAGG-TTGCCAAATCAAAGACGATTCAAAACGTCACTAGTGGTCCCCGATAGGCCCAA
193 AGCATTG-AGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAA
* *
1183 AATAACAAGTTTTCCAATTGAGCTAAAAACTTCACAGTGGACTAATCTCACC
257 AATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
** * * * *
1235 AAAATGATTATAAATAGGACATAAACAATGGAAAAAAAAGCATTGAGGTTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
** * * * *
1300 GATTCAAAACGTCACTAATGGTTCGCCGATAGGCCTAAAATAACAAGTGTTCCAAATGAGGTAAA
66 GATTCAAAACGGAACTAATGG-GCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
1365 AACTTCACAGTGGACTAATCTCACC-AAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * *
1429 CATTGATGTTTCCCAAATCGAAGACGATTCAGAACAG-CACTAAGGGGCCCCGATAGGCCCAAAA
195 CATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GTCACTAATGGGCCCCGATAGGCCCAAAA
* * *
1493 TAACAAGTATTTCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAAC
259 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* * * * * * *
1543 AAAATGATTATACTTAGGCCCTAAACAATGGAAAGAAAAACATTGATGTTTCCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * * * ** * *
1608 GATTCAGAAC-AATACTAATGGGCCCCGTTAGGCCAAAAATAACAAGAATTTCAAATGAGCTAAT
66 GATTCAAAACGGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
*
1672 AACTTCACAGTGGACTAATCTCAACAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
** * * * * ** *
1737 CATCAAGGGTTGCCAAATCGATGACGATTCAAAACGTCACTACTAGGCCTTGATAGGCCCCAAAT
195 CATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAAT
* **
1802 AACAAGTGTTCCAAATGAGCTAAAAACTTCATAGTGTTCTAATCTCACC
260 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* ** *
1851 GAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATAAAAAAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
** * * * * * * *
1916 GATTCAAAACATAGCTAATGGGCCCTGAAAGTCCTAAAATAACATGTGTTCGAAATGAGCTAAAA
66 GATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
*
1981 ACTTCACAGTGGACTAATCTCACCAAAATGATCATAGTTAGGCCATAAACAATGGAAAGAAAAGC
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
* * * *
2046 ACTGAGGTTTCCCAAATCGAAGACGATTCAAAACGACACTTATGGGCCCCGATAGGCCCAAAATA
196 ATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATA
* * * * *
2111 ACAAGTGTTCCAAATGAGCTAATGATACGAATC-TAGTTGTATTAGAT-TCA--
261 ACAAGTGTTCCAAATGAGCTAA--AAAC--TTCACAG-TGGACTA-ATCTCACC
** * * * * * **** * * * *
2161 AATCTAGCCTTGAATA-TCTA--TCA-AAGTCGACTTGAACTTCCTCAA-CTTCTA-GATGTG-T
1 AAAAT-G-ATT--ATAGT-TAGGCCATAA-AC-AATGGAA---AGAAAAGCATCGAGGGT-TGCC
** * * * * * ** *** ** * ** * ** *
2219 ATGTCGATGAC-CTTCACAA-GGTGATTCCTCTTCTTTCG-TCGATCCAAAGTCTCCAATTAGAC
55 AAATCGAAGACGATTCAAAACGG-AACTAATGGGC-CCCGATAGGCCCAAAAT-AACAAGT-G--
* * * * *** * * ** * * *
2281 CTGCAATTGTCAACTCAAGAACACAAGATTCACA-AACAATCAAGTATCA-CAACTTAATTGTTT
114 TTCCAAATG--AGCT-AA-AA-AC----TTCACAGTGGACT-AA-TCTCACCAAAATGATT-ATA
* * ** ** ** * * *
2344 GCTAGGAC-TCTACAA--GATTGAAGAA-CCCTAAGTTTTGCTCAAA-C-TAGA--A--CAAGAA
167 GTTAGGCCATAAACAATGGAAAGAA-AAGCATTGAGGTTTGC-CAAATCGAAGACGATTCAA-AA
***** * * *** * * * *
2399 -G---CTAA-GATAATCAATTTGG--GTGAA-AAC-----CT-CAAATTA-TTAATCAACTTCAC
229 CGTCACTAATGGGCCCCGA-TAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA-AAACTTCAC
2449 AGTGGACTAATCTCACC
292 AGTGGACTAATCTCACC
* * * *
2466 AAAAGGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCCAGGGTTGCCAAATCAAAAAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * * *
2531 GATTCAAAACAGAGCTAATGGGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAAAA
66 GATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
* *
2596 ACTTCACAGTGGACTAATCTCAACAAAATGGTTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
* * ** * * * *
2661 ATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGAGCCCCGAAAGACCTAAAATA
196 ATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATA
** ** *
2726 ACAAGTGTTCCAAATGAGCTATTAACTTTGCAGTGGACTAATCTCCCC
261 ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* * * *
2774 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACATCGAGGGTTACGAAATCGAATAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * *
2839 GATTCAAAACAGAACTAAT-GGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAAAA
66 GATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
2903 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
* * * * *
2968 ATTGATGTTTCCCAAATCGAAGACGATTCAGAACATCACTAATGAGCCCCGATAGGCCCAAAATA
196 ATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATA
*
3033 ACAAGTGTTCCAAATGAGCTAAAAACTTACACGGTGGACTAATACGTCACC
261 ACAAGTGTTCCAAATGAGCTAAAAACTT-CACAGTGGACTAAT-C-TCACC
* *
3084 AAAATAGATTATAGTTAGGCCATAAACAAATAGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAA
1 AAAAT-GATTATAGTTAGGCCATAAAC-AAT-GGAAAGAAAAGCATCGAGGGTTGCCAAATCGAA
3149 GACGATTCAAAACGGAACTAATGGG-CCCGATAGGCCCAAAATAACAAGTGTTCCAAAAT-AGCT
63 GACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCC-AAATGAGCT
* *
3212 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTATGCCATAAACAGTGGAAAGAA
127 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
* * * *
3277 AAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTCACTAAAGGGCCCCGATATGCCCAA
192 AAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAA
* * * *
3342 AATATCAAGTGTTCCAAATAAGCCAAAAACTTCACAGTGGACTTATCTCACC
257 AATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* * * *
3394 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGATGTTTCCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * * * *
3459 GATTCAGAAC-AACACTAAGGGGCCCCGATAGGCCCAAAATAACAAGTATTTCAAATGAGCTAAA
66 GATTCAAAACGGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
* *
3523 AACTTCACAGTGGACTAATCACAACAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * *
3588 CATTGATGTTTCCCAAATCGAAGACGATTCAGAACAAT-ACTAATGGGCCCCCGATAGGCCAAAA
195 CATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GTCACTAATGGG-CCCCGATAGGCCCAAA
* * * * *
3652 ATAACAAGTATTTCAAATGAGCTAATAACTCCACAGTGGACTAATCTCAACA
258 ATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTC-ACC
* **
3704 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGTTGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * *
3769 GATTCAAAAC-GAGACTAATGGGCCCCGATAGGCTCAAAATTACAAGTGTTCCAAGTGAGCCTAA
66 GATTCAAAACGGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAG-CTAA
* *
3833 AAACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTACGACCATAAACAATGGAAAGAAA
129 AAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA-GGCCATAAACAATGGAAAGAAA
* * * ***
3898 AGCATTGAGGTTTCCCAAATCGAAGACGACTCAAAACGACACTAATGGGCCTTAATAGGCCCAAA
193 AGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAA
*
3963 ATAACAAGTGTTCCAAATGAGCCAAAAACTTCACAGTGGACTAATCTCACC
258 ATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* * *
4014 GAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAAGGTTGCCAAATC-AATGA
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAA-GA
** **
4078 CGATTCAAAACGTCACTAATGGGCCTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
65 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
* *** *
4143 AACTTCACAATTTTCTAATCTCACCGAAATGATTATAGTTAGGCCATAAA-AATGGAAAGAAAAG
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
** * ** * **
4207 CATCAAGGGTTGCCAAATCGATTACGATTCAAAACGTCATTAATGGGCCTTGATAGGCCCAAAAT
195 CATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAAT
4272 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
260 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
** * * *
4321 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAATATTGAGGTTTACCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* ** ** * * *
4386 GATTTAAAACGTCACTAATGGGCCTTGATGGGCACAAAATAACAAGTGTTCTAAATGAGCTAAAA
66 GATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
* *
4451 ACTTCACAGCGGACTAATCTCACCAAAAAGATTATAGTTAGGCCATAAACAATGGAAAGAAAAAG
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAG-AAAAG
* * * ** * *
4516 -ATTGAGGTTTCCCAGATCGAAGACGATTCAAAACGACACTAATGGGCCTTGATAGACCAAAAAT
195 CATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAAT
* **
4580 AACAAGTGTTCCAAATGTGCTAAAAACTTCACAGTGTTCTAATCTCACC
260 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* * * *
4629 GAAATGATTATAGTTAGGCTATAAACAATGGAAAGAAAAGCATCAAAGGTTGCCAAATC-AATGA
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAA-GA
** * *
4693 CGATTCAAAACGTCACTAATGGGTCCCGATAGGCCCAAAATAACAATGTGTTTCAAATGAGCTAA
65 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAA-GTGTTCCAAATGAGCT-A
** * *
4758 AAAACTTCACAGTGTTCTAATCTCACCGAAATGATTACAGTTAGGCCATAAACAATGGAAAGAAA
128 AAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
** * ** * * *
4823 AGCATCAAGGGTTGCCAAATCGAAGACGATTC-AAACGGAACTAATGGGCCCCTAAAGGCCTAAA
193 AGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAA
* *
4887 ATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGCGGACTAATCTCAGAC
258 ATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCA-CC
* *
4939 AGAATGATTA-ATGTTAGGCCATAAACAATGGAAAG-AAAGCATCGAGGGTTGCCAAATCGAATA
1 AAAATGATTATA-GTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGA
* * * *
5002 CGATTCAAAAGGGAACTAAT-GGCCCCGAAAGACCTAAAATAACAAGTGTTCCAAATGAGCTAAA
65 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
* *
5066 AATTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAA
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * ** * *
5131 TATTGAGGTTTACCAAATCGAAGACGATTTAAAACGTCACTAATGGGCCTTGATGGGCACAAAAT
195 CATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAAT
* *
5196 AACAAGTGTTCTAAATGAGCTAAAAAACTTCACAGCGGACTAATCTCACC
260 AACAAGTGTTCCAAATGAGCT-AAAAACTTCACAGTGGACTAATCTCACC
* * * * * *
5246 AAAAAAGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTTCCCAGATCGAAGA
1 -AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGA
** * * *
5311 CGATTCAAAAC-GACACTAATGGGCCTTGATAGACCCAAAATAACAAGTGTTGCAAATGAGCGAA
65 CGATTCAAAACGGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
** *
5375 AAACTTCACAGTGTTCTAATCTCACCGAAATGATTATAGTTAGGCCATAAA-AATGGAAAGAAAA
129 AAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
** * **
5439 GCATCAAGGGTTGCCAAATC-AATGACGATTCAAAACGTCACTAATGGGCCTTGATAGGCCCAAA
194 GCATTGAGGTTTGCCAAATCGAA-GACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAA
5503 ATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
258 ATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* * **
5554 AAAATGATTATAGTTAGGCCATAAACCAATGGAAAGAAAAGCATCAAGGGTTGCCAAATTGATTA
1 AAAATGATTATAGTTAGGCCATAAA-CAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGA
** * **
5619 CGATTCAAAACGTCATTAATGGGCCTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
65 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
5684 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGGACAAGAAA
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAAT-GGA-AAGAAA
* *
5749 AGACATTGAGGTTTGCCAAATCGAAGACGATTCAATACGTCACTAATGAGCCCCGATAGGCCCAA
193 AG-CATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAA
*
5814 AATAACAAGTGTTCCAAATGAGCTAAAAACTTACACGGTGGACTAATACGTCACC
257 AATAACAAGTGTTCCAAATGAGCTAAAAACTT-CACAGTGGACTAAT-C-TCACC
* *
5869 AAAATAGATTATAGTTAGGCCATAAACAAATAGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAA
1 AAAAT-GATTATAGTTAGGCCATAAAC-AAT-GGAAAGAAAAGCATCGAGGGTTGCCAAATCGAA
5934 GACGATTCAAAACGGAACTAATGGG-CCCGATAGGCCCAAAATAACAAGTGTTCCAAAAT-AGCT
63 GACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCC-AAATGAGCT
* *
5997 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTATGCCATAAACAGTGGAAAGAA
127 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
* * * *
6062 AAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTCACTAAAGGGCCCCGATATGCCCAA
192 AAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAA
* * * *
6127 AATATCAAGTGTTCCAAATAAGCCAAAAACTTCACAGTGGACTTATCTCACC
257 AATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* * * *
6179 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGATGTTTCCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * * * *
6244 GATTCAGAAC-AACACTAAGGGGCCCCGATAGGCCCAAAATAACAAGTATTTCAAATGAGCTAAA
66 GATTCAAAACGGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
* *
6308 AACTTCACAGTGGACTAATCACAACAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * *
6373 CATTGATGTTTCCCAAATCGAAGACGATTCAGAACAAT-ACTAATGGGCCCCCGATAGGCCAAAA
195 CATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GTCACTAATGGG-CCCCGATAGGCCCAAA
* * * * *
6437 ATAACAAGTATTTCAAATGAGCTAATAACTCCACAGTGGACTAATCTCAACA
258 ATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTC-ACC
* **
6489 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGTTGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* * *
6554 GATTCAAAAC-GAGACTAATGGGCCCCGATAGGCTCAAAATTACAAGTGTTCCAAGTGAGCCTAA
66 GATTCAAAACGGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAG-CTAA
* *
6618 AAACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTACGACCATAAACAATGGAAAGAAA
129 AAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA-GGCCATAAACAATGGAAAGAAA
* * * ***
6683 AGCATTGAGGTTTCCCAAATCGAAGACGACTCAAAACGACACTAATGGGCCTTAATAGGCCCAAA
193 AGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAA
*
6748 ATAACAAGTGTTCCAAATGAGCCAAAAACTTCACAGTGGACTAATCTCACC
258 ATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* * *
6799 GAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAAGGTTGCCAAATC-AATGA
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAA-GA
** **
6863 CGATTCAAAACGTCACTAATGGGCCTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
65 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
* *** *
6928 AACTTCACAATTTTCTAATCTCACCGAAATGATTATAGTTAGGCCATAAA-AATGGAAAGAAAAG
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
** * ** * **
6992 CATCAAGGGTTGCCAAATCGATTACGATTCAAAACGTCATTAATGGGCCTTGATAGGCCCAAAAT
195 CATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAAT
7057 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
260 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
** * * *
7106 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAATATTGAGGTTTACCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
* ** ** * * *
7171 GATTTAAAACGTCACTAATGGGCCTTGATGGGCACAAAATAACAAGTGTTCTAAATGAGCTAAAA
66 GATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
* **
7236 ACTTCACAGCGGACTAATCTCACCAAAAAAATTATAGTTAGGCCATAAACAATGGAAAGAAAA-C
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
* ***
7300 ATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCTTTGATAGGCCCAAAATA
196 ATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATA
*
7365 ACAAGTGTTCCAAATGAGCGAAAAAACTTCACAGT
261 ACAAGTGTTCCAAATGAGC-TAAAAACTTCACAGT
7400 TTTCT
Statistics
Matches: 6108, Mismatches: 824, Indels: 318
0.84 0.11 0.04
Matches are distributed among these distances:
288 11 0.00
289 19 0.00
290 8 0.00
291 13 0.00
292 3 0.00
293 2 0.00
294 3 0.00
295 4 0.00
296 7 0.00
298 6 0.00
299 7 0.00
300 11 0.00
301 21 0.00
302 26 0.00
303 16 0.00
304 5 0.00
305 4 0.00
306 91 0.01
307 1078 0.18
308 2109 0.35
309 566 0.09
310 951 0.16
311 236 0.04
312 254 0.04
313 353 0.06
314 33 0.01
315 24 0.00
316 117 0.02
317 58 0.01
319 7 0.00
320 4 0.00
321 3 0.00
322 2 0.00
323 3 0.00
324 15 0.00
325 8 0.00
326 19 0.00
327 11 0.00
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (308 bp):
AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
GATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
ATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATA
ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
Found at i:865 original size:462 final size:461
Alignment explanation
Indices: 1--7399 Score: 9202
Period size: 462 Copynumber: 16.0 Consensus size: 461
* *
1 AAAATGATTATAGTTAGGCCGTAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
** * *
66 GATTCAAAACAACACTAATGGGCCCCCATAGGCCCAAAATAACAAGTGATCCAAATGAGCTAAAA
66 GATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
*
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGC
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
* * * * * *
196 ATCGAGGGTTGCCAAATCGAAAACGATTCAAAACAGAACTAATGCGCCCCGAAAGGCCCAAAATA
196 ATTGAGGTTTCCCAAATCGAAGACGATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAATA
261 ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAG
260 ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAG
*
326 GCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGA-ACT
325 GCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GACACT
390 AATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTA
389 AATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTA
*
455 ATTTCACC
454 ATCTCACC
** *
463 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGATGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
* ** * *
528 GATTCAAAACGTCACTAAAGGGCCTTGATACGCCCAAAATAACCAGTGTTCCAAATGAGCTAAAA
66 GATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
593 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
* * * * * *
658 ATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGACCTAAAATA
196 ATTGAGGTTTCCCAAATCGAAGACGATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAATA
** * *
723 ACAAGTGTTCCAAATGAGCTATTAACTTTACAGTGGACTAATCTCACCAAAATAATTATAGTTAG
260 ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAG
* * *
788 GCAATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAATGACACTA
325 GCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTA
* *
853 ATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAGATGAGCTAAAAACGTCACAGTGGACTAA
390 ATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAA
* *
918 TTTGACC
455 TCTCACC
* *
925 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAGAGGACATCGAA-GGTTGCCAAATCGAA
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA-AAG-CATC-AAGGGTTGCCAAATCGAT
*
989 GACGATTCAAAACGTCACTAATGGTCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTA
63 GACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTA
* *
1054 AGAA-TTGAACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
128 AAAACTT-CACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
* * * * * * *
1118 AGGCATCGAAGG-TTGCCAAATCAAAGACGATTCAAAACGTCACTAGTGGTCCCCGATAGGCCCA
192 AAGCATTG-AGGTTTCCCAAATCGAAGACGATTCAAAACG-AACTAATGGGCCCCGATAGGCCCA
* *
1182 AAATAACAAGTTTTCCAATTGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA
255 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA
** * * *
1247 AATAGGACATAAACAATGGAAAAAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGT
320 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGA
* * * *
1312 CACTAATGGTTCGCCGATAGGCCTAAAATAACAAGTGTTCCAAATGAGGTAAAAACTTCACAGTG
385 CACTAATGG-GCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
1377 GACTAATCTCACC
449 GACTAATCTCACC
** * * * *
1390 -AAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGATGTTTCCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
* * * *
1454 GATTCAGAACAG-CACTAAGGGGCCCCGATAGGCCCAAAATAACAAGTATTTCAAATGAGCTAAA
66 GATTCAAAAC-GTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
* * * *
1518 AACTTCACAGTGGACTAATCTCAACAAAATGATTATACTTAGGCCCTAAACAATGGAAAGAAAAA
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * *
1583 CATTGATGTTTCCCAAATCGAAGACGATTCAGAACAATACTAATGGGCCCCGTTAGGCCAAAAAT
195 CATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAAT
** * * *
1648 AACAAGAATTTCAAATGAGCTAATAACTTCACAGTGGACTAATCTCAACAAAATGATTATAGTTA
259 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA
** * * *
1713 GGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGACGATTCAAAACGTCACT
324 GGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACT
* * ** * * **
1778 ACTAGGCCTTGATAGGCCCCAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCATAGTGTTCTA
389 AATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTA
1843 ATCTCACC
454 ATCTCACC
* * ** **
1851 GAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATAAAAAAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
* * * * * * *
1916 GATTCAAAACAT-AGCTAATGGGCCCTGAAAGTCCTAAAATAACATGTGTTCGAAATGAGCTAAA
66 GATTCAAAACGTCA-CTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
*
1980 AACTTCACAGTGGACTAATCTCACCAAAATGATCATAGTTAGGCCATAAACAATGGAAAGAAAAG
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* *
2045 CACTGAGGTTTCCCAAATCGAAGACGATTCAAAACGACACTTATGGGCCCCGATAGGCCCAAAAT
195 CATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAAT
* * * * * ** *
2110 AACAAGTGTTCCAAATGAGCTAATGATACGAATC-TAGTTGTATTAGAT-TCA--AATCTAGCCT
259 AACAAGTGTTCCAAATGAGCTAA--AAAC--TTCACAG-TGGACTA-ATCTCACCAAAAT-G-AT
* * * * **** * * * * ** *
2171 TGAATA-TCTA--TCA-AAGTCGACTTGAACTTCCTCAA-C-TTCTAGATGTG-TATGTCGATGA
316 T--ATAGT-TAGGCCATAA-AC-AATGGAA---AGAAAAGCATT-GAGGTTTGCCAAATCGAAGA
* * * ** * ** *** ** * ** * ** * * * *
2229 C-CTTCACAAGGTGATTCCTCTTCTTTCG-TCGATCCAAAGTCTCCAATTAGACCTGCAATTGTC
372 CGATTCAAAACGACACTAATGGGC-CCCGATAGGCCCAAAAT-AACAAGT-G--TTCCAAATG--
* *** * *
2292 AACTCAAGAACACAAGATTCACA-AACAATCAAGTATCA-C
430 AGCT-AA-AA-AC----TTCACAGTGGACT-AA-TCTCACC
** * * * * * ** ** * * **
2331 AACTTAATTGTTTGCTAGGAC-TCTACAA--GATTGAAGAACCCT-AAGTTTTGCTCAAA-C--T
1 AAAATGATT-ATAGTTAGGCCATAAACAATGGAAAGAA-AAGCATCAAGGGTTGC-CAAATCGAT
* ***** * * *** * * *
2389 -A-GA-ACAAGAA-G---CTAA-GATAATCAATTTGG--GTGAA-AAC-----CT-CAAATTA-T
63 GACGATTCAA-AACGTCACTAATGGGCCCCGA-TAGGCCCAAAATAACAAGTGTTCCAAATGAGC
* *
2436 TAATCAACTTCACAGTGGACTAATCTCACCAAAAGGATTATAGTTAGGCCATAAACAATGGAAAG
126 TAA-AAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAG
** * * * * * * *
2501 AAAAGCATCCAGGGTTGCCAAATCAAAAACGATTCAAAACAGAGCTAATGGGCCCCGAAAGGCCT
190 AAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAAC-GAACTAATGGGCCCCGATAGGCCC
* *
2566 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAACAAAATGGTTAT
254 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* *
2631 AGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACG
319 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-
* * * * ** **
2696 GA-ACTAATGAGCCCCGAAAGACCTAAAATAACAAGTGTTCCAAATGAGCTATTAACTTTGCAGT
383 GACACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
*
2760 GGACTAATCTCCCC
448 GGACTAATCTCACC
* * * *
2774 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACATCGAGGGTTACGAAATCGAAT-A
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCG-ATGA
* * *
2838 CGATTCAAAACAG-AACTAAT-GGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAA
65 CGATTCAAAAC-GTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
2901 AAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
129 AAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
* * *
2966 GCATTGATGTTTCCCAAATCGAAGACGATTCAGAAC-ATCACTAATGAGCCCCGATAGGCCCAAA
194 GCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGA--ACTAATGGGCCCCGATAGGCCCAAA
*
3030 ATAACAAGTGTTCCAAATGAGCTAAAAACTTACACGGTGGACTAATACGTCACCAAAATAGATTA
257 ATAACAAGTGTTCCAAATGAGCTAAAAACTT-CACAGTGGACTAAT-C-TCACCAAAAT-GATTA
3095 TAGTTAGGCCATAAACAAATAGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAA
318 TAGTTAGGCCATAAAC-AAT-GGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAA
3160 ACGGA-ACTAATGGG-CCCGATAGGCCCAAAATAACAAGTGTTCCAAAAT-AGCTAAAAACTTCA
381 AC-GACACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCC-AAATGAGCTAAAAACTTCA
3222 CAGTGGACTAATCTCACC
444 CAGTGGACTAATCTCACC
* * * *
3240 AAAATGATTATAGTTATGCCATAAACAGTGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
* * * * *
3305 GATTCAAAACGTCACTAAAGGGCCCCGATATGCCCAAAATATCAAGTGTTCCAAATAAGCCAAAA
66 GATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
*
3370 ACTTCACAGTGGACTTATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
* * * *
3435 ATTGATGTTTCCCAAATCGAAGACGATTCAGAACAACACTAAGGGGCCCCGATAGGCCCAAAATA
196 ATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAATA
* * * *
3500 ACAAGTATTTCAAATGAGCTAAAAACTTCACAGTGGACTAATCACAACAAAATGATTATAGTTAG
260 ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAG
* * * * *
3565 GCCATAAACAATGGAAAGAAAAGCATTGATGTTTCCCAAATCGAAGACGATTCAGAACAATACTA
325 GCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTA
* * * * *
3630 ATGGGCCCCCGATAGGCCAAAAATAACAAGTATTTCAAATGAGCTAATAACTCCACAGTGGACTA
390 ATGGG-CCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTA
*
3695 ATCTCAACA
454 ATCTC-ACC
*
3704 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGTTGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
** * * *
3769 GATTCAAAACGAGACTAATGGGCCCCGATAGGCTCAAAATTACAAGTGTTCCAAGTGAGCCTAAA
66 GATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAG-CTAAA
* *
3834 AACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTACGACCATAAACAATGGAAAGAAAA
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA-GGCCATAAACAATGGAAAGAAAA
* ***
3899 GCATTGAGGTTTCCCAAATCGAAGACGACTCAAAACGACACTAATGGGCCTTAATAGGCCCAAAA
194 GCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAA
* *
3964 TAACAAGTGTTCCAAATGAGCCAAAAACTTCACAGTGGACTAATCTCACCGAAATGATTATAGTT
258 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTT
** *
4029 AGGCCATAAACAATGGAAAGAAAAGCATCAAAGG-TTGCCAAATC-AATGACGATTCAAAACGTC
323 AGGCCATAAACAATGGAAAGAAAAGCAT-TGAGGTTTGCCAAATCGAA-GACGATTCAAAACGAC
** * ***
4092 ACTAATGGGCCTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATTTT
386 ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGA
4157 CTAATCTCACC
451 CTAATCTCACC
* *
4168 GAAATGATTATAGTTAGGCCATAAA-AATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATTAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
* **
4232 GATTCAAAACGTCATTAATGGGCCTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
66 GATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
**
4297 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAAT
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
* * * ** * *
4362 ATTGAGGTTTACCAAATCGAAGACGATTTAAAACGTCACTAATGGGCCTTGATGGGCACAAAATA
196 ATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAATA
* * *
4427 ACAAGTGTTCTAAATGAGCTAAAAACTTCACAGCGGACTAATCTCACCAAAAAGATTATAGTTAG
260 ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAG
* *
4492 GCCATAAACAATGGAAAGAAAAAG-ATTGAGGTTTCCCAGATCGAAGACGATTCAAAACGACACT
325 GCCATAAACAATGGAAAG-AAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACT
** * * * **
4556 AATGGGCCTTGATAGACCAAAAATAACAAGTGTTCCAAATGTGCTAAAAACTTCACAGTGTTCTA
389 AATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTA
4621 ATCTCACC
454 ATCTCACC
* * * *
4629 GAAATGATTATAGTTAGGCTATAAACAATGGAAAGAAAAGCATCAAAGGTTGCCAAATCAATGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
* *
4694 GATTCAAAACGTCACTAATGGGTCCCGATAGGCCCAAAATAACAATGTGTTTCAAATGAGCTAAA
66 GATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAA-GTGTTCCAAATGAGCT-AA
** * *
4759 AAACTTCACAGTGTTCTAATCTCACCGAAATGATTACAGTTAGGCCATAAACAATGGAAAGAAAA
129 AAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
** * * * * *
4824 GCATCAAGGGTTGCCAAATCGAAGACGATTC-AAACGGAACTAATGGGCCCCTAAAGGCCTAAAA
194 GCATTGAGGTTTCCCAAATCGAAGACGATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAA
* * *
4888 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGCGGACTAATCTCAGACAGAATGATTA-ATG
258 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCA-CCAAAATGATTATA-G
* * * *
4952 TTAGGCCATAAACAATGGAAAG-AAAGCATCGAGGGTTGCCAAATCGAATACGATTCAAAAGGGA
321 TTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA-CGA
* * * *
5016 -ACTAAT-GGCCCCGAAAGACCTAAAATAACAAGTGTTCCAAATGAGCTAAAAATTTCACAGTGG
385 CACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
5079 ACTAATCTCACC
450 ACTAATCTCACC
** ** * * *
5091 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAATATTGAGGTTTACCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
* ** * * *
5156 GATTTAAAACGTCACTAATGGGCCTTGATGGGCACAAAATAACAAGTGTTCTAAATGAGCTAAAA
66 GATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCT-AAA
* *
5221 AACTTCACAGCGGACTAATCTCACCAAAAAAGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
130 AACTTCACAGTGGACTAATCTCACC-AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
* * ** *
5286 ACATTGAGGTTTCCCAGATCGAAGACGATTCAAAACGACACTAATGGGCCTTGATAGACCCAAAA
194 GCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAA
* * ** *
5351 TAACAAGTGTTGCAAATGAGCGAAAAACTTCACAGTGTTCTAATCTCACCGAAATGATTATAGTT
258 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTT
** * *
5416 AGGCCATAAA-AATGGAAAGAAAAGCATCAAGGGTTGCCAAATC-AATGACGATTCAAAACGTCA
323 AGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAA-GACGATTCAAAACGACA
**
5479 CTAATGGGCCTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGAC
387 CTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGAC
5544 TAATCTCACC
452 TAATCTCACC
* *
5554 AAAATGATTATAGTTAGGCCATAAACCAATGGAAAGAAAAGCATCAAGGGTTGCCAAATTGATTA
1 AAAATGATTATAGTTAGGCCATAAA-CAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGA
* **
5619 CGATTCAAAACGTCATTAATGGGCCTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
65 CGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
5684 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGGACAAGAAA
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAAT-GGA-AAGAAA
* * * *
5749 AGACATTGAGGTTTGCCAAATCGAAGACGATTCAATACGTCACTAATGAGCCCCGATAGGCCCAA
193 AG-CATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAA
*
5814 AATAACAAGTGTTCCAAATGAGCTAAAAACTTACACGGTGGACTAATACGTCACCAAAATAGATT
256 AATAACAAGTGTTCCAAATGAGCTAAAAACTT-CACAGTGGACTAAT-C-TCACCAAAAT-GATT
5879 ATAGTTAGGCCATAAACAAATAGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
317 ATAGTTAGGCCATAAAC-AAT-GGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
5944 AACGGA-ACTAATGGG-CCCGATAGGCCCAAAATAACAAGTGTTCCAAAAT-AGCTAAAAACTTC
380 AAC-GACACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCC-AAATGAGCTAAAAACTTC
6006 ACAGTGGACTAATCTCACC
443 ACAGTGGACTAATCTCACC
* * * *
6025 AAAATGATTATAGTTATGCCATAAACAGTGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
* * * * *
6090 GATTCAAAACGTCACTAAAGGGCCCCGATATGCCCAAAATATCAAGTGTTCCAAATAAGCCAAAA
66 GATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
*
6155 ACTTCACAGTGGACTTATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
* * * *
6220 ATTGATGTTTCCCAAATCGAAGACGATTCAGAACAACACTAAGGGGCCCCGATAGGCCCAAAATA
196 ATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAATA
* * * *
6285 ACAAGTATTTCAAATGAGCTAAAAACTTCACAGTGGACTAATCACAACAAAATGATTATAGTTAG
260 ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAG
* * * * *
6350 GCCATAAACAATGGAAAGAAAAGCATTGATGTTTCCCAAATCGAAGACGATTCAGAACAATACTA
325 GCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTA
* * * * *
6415 ATGGGCCCCCGATAGGCCAAAAATAACAAGTATTTCAAATGAGCTAATAACTCCACAGTGGACTA
390 ATGGG-CCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTA
*
6480 ATCTCAACA
454 ATCTC-ACC
*
6489 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGTTGAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
** * * *
6554 GATTCAAAACGAGACTAATGGGCCCCGATAGGCTCAAAATTACAAGTGTTCCAAGTGAGCCTAAA
66 GATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAG-CTAAA
* *
6619 AACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTACGACCATAAACAATGGAAAGAAAA
130 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA-GGCCATAAACAATGGAAAGAAAA
* ***
6684 GCATTGAGGTTTCCCAAATCGAAGACGACTCAAAACGACACTAATGGGCCTTAATAGGCCCAAAA
194 GCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAA
* *
6749 TAACAAGTGTTCCAAATGAGCCAAAAACTTCACAGTGGACTAATCTCACCGAAATGATTATAGTT
258 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTT
** *
6814 AGGCCATAAACAATGGAAAGAAAAGCATCAAAGG-TTGCCAAATC-AATGACGATTCAAAACGTC
323 AGGCCATAAACAATGGAAAGAAAAGCAT-TGAGGTTTGCCAAATCGAA-GACGATTCAAAACGAC
** * ***
6877 ACTAATGGGCCTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATTTT
386 ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGA
6942 CTAATCTCACC
451 CTAATCTCACC
* *
6953 GAAATGATTATAGTTAGGCCATAAA-AATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATTAC
1 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
* **
7017 GATTCAAAACGTCATTAATGGGCCTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
66 GATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
**
7082 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAAT
131 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
* * * ** * *
7147 ATTGAGGTTTACCAAATCGAAGACGATTTAAAACGTCACTAATGGGCCTTGATGGGCACAAAATA
196 ATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAATA
* * **
7212 ACAAGTGTTCTAAATGAGCTAAAAACTTCACAGCGGACTAATCTCACCAAAAAAATTATAGTTAG
260 ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAG
* *
7277 GCCATAAACAATGGAAAGAAAA-CATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGTCACTA
325 GCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTA
*** *
7341 ATGGGCTTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCGAAAAAACTTCACAGT
390 ATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGC-TAAAAACTTCACAGT
7400 TTTCT
Statistics
Matches: 5997, Mismatches: 772, Indels: 337
0.84 0.11 0.05
Matches are distributed among these distances:
442 10 0.00
443 18 0.00
444 9 0.00
445 11 0.00
447 2 0.00
448 3 0.00
449 5 0.00
450 6 0.00
451 1 0.00
452 8 0.00
453 8 0.00
454 8 0.00
455 23 0.00
456 25 0.00
457 16 0.00
458 5 0.00
459 10 0.00
460 83 0.01
461 963 0.16
462 1526 0.25
463 641 0.11
464 867 0.14
465 372 0.06
466 572 0.10
467 368 0.06
468 41 0.01
469 31 0.01
470 151 0.03
471 92 0.02
472 53 0.01
473 9 0.00
474 6 0.00
475 3 0.00
476 2 0.00
478 11 0.00
479 9 0.00
480 18 0.00
481 11 0.00
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (461 bp):
AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGAC
GATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
ATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGAACTAATGGGCCCCGATAGGCCCAAAATAA
CAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGG
CCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTAA
TGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAAT
CTCACC
Found at i:2710 original size:154 final size:154
Alignment explanation
Indices: 2441--7399 Score: 6639
Period size: 154 Copynumber: 32.1 Consensus size: 154
2431 ATTATTAATC
*
2441 AACTTCACAGTGGACTAATCTCACCAAAAGGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * *
2506 CATCCAGGGTTGCCAAATCAAAAACGATTCAAAACAG-AGCTAATGGGCCCCGAAAGGCCTAAAA
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAAC-GTAACTAATGGGCCCCGATAGGCCCAAAA
2570 TAACAAGTGTTCCAAATGAGCTAAA
130 TAACAAGTGTTCCAAATGAGCTAAA
* *
2595 AACTTCACAGTGGACTAATCTCAACAAAATGGTTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * *
2660 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGAGCCCCGAAAGACCTAAAAT
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAAT
**
2725 AACAAGTGTTCCAAATGAGCTATT
131 AACAAGTGTTCCAAATGAGCTAAA
** * *
2749 AACTTTGCAGTGGACTAATCTCCCCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAA
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * *
2814 CATCGAGGGTTACGAAATCGAATACGATTCAAAACAG-AACTAAT-GGCCCCGAAAGGCCTAAAA
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAAC-GTAACTAATGGGCCCCGATAGGCCCAAAA
2877 TAACAAGTGTTCCAAATGAGCTAAA
130 TAACAAGTGTTCCAAATGAGCTAAA
2902 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * * * *
2967 CATTGATGTTTCCCAAATCGAAGACGATTCAGAACATCACTAATGAGCCCCGATAGGCCCAAAAT
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAAT
3032 AACAAGTGTTCCAAATGAGCTAAA
131 AACAAGTGTTCCAAATGAGCTAAA
*
3056 AACTTACACGGTGGACTAATACGTCACCAAAATAGATTATAGTTAGGCCATAAACAAATAGGAAA
1 AACTT-CACAGTGGACTAAT-C-TCACCAAAAT-GATTATAGTTAGGCCATAAAC-AAT-GGAAA
* * *
3121 GAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGG-CCCGATAGGCC
60 GAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCC
3185 CAAAATAACAAGTGTTCCAAAAT-AGCTAAA
125 CAAAATAACAAGTGTTCC-AAATGAGCTAAA
* *
3215 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTATGCCATAAACAGTGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * *
3280 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTCACTAAAGGGCCCCGATATGCCCAAAAT
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAAT
* * *
3345 ATCAAGTGTTCCAAATAAGCCAAA
131 AACAAGTGTTCCAAATGAGCTAAA
*
3369 AACTTCACAGTGGACTTATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * * *
3434 CATTGATGTTTCCCAAATCGAAGACGATTCAGAAC-AACACTAAGGGGCCCCGATAGGCCCAAAA
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTA-ACTAATGGGCCCCGATAGGCCCAAAA
* *
3498 TAACAAGTATTTCAAATGAGCTAAA
130 TAACAAGTGTTCCAAATGAGCTAAA
* *
3523 AACTTCACAGTGGACTAATCACAACAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * * *
3588 CATTGATGTTTCCCAAATCGAAGACGATTCAGAAC-AATACTAATGGGCCCCCGATAGGCCAAAA
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTA-ACTAATGGG-CCCCGATAGGCCCAAA
* * *
3652 ATAACAAGTATTTCAAATGAGCTAAT
129 ATAACAAGTGTTCCAAATGAGCTAAA
* *
3678 AACTCCACAGTGGACTAATCTCAACAAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
1 AACTTCACAGTGGACTAATCTC-ACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
* ** *
3743 GCATCAAGGGTTGCCAAATCGTTGACGATTCAAAACG-AGACTAATGGGCCCCGATAGGCTCAAA
65 GCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTA-ACTAATGGGCCCCGATAGGCCCAAA
* *
3807 ATTACAAGTGTTCCAAGTGAGCCTAAA
129 ATAACAAGTGTTCCAAATGAG-CTAAA
* *
3834 AACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTACGACCATAAACAATGGAAAGAAAA
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA-GGCCATAAACAATGGAAAGAAAA
* * * * ***
3899 GCATTGAGGTTTCCCAAATCGAAGACGACTCAAAACG-ACACTAATGGGCCTTAATAGGCCCAAA
65 GCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTA-ACTAATGGGCCCCGATAGGCCCAAA
*
3963 ATAACAAGTGTTCCAAATGAGCCAAA
129 ATAACAAGTGTTCCAAATGAGCTAAA
*
3989 AACTTCACAGTGGACTAATCTCACCGAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * **
4054 CATCAAAGGTTGCCAAATC-AATGACGATTCAAAACGTCACTAATGGGCCTTGATAGGCCCAAAA
66 CATCGAGGGTTGCCAAATCGAA-GACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAA
4118 TAACAAGTGTTCCAAATGAGCTAAA
130 TAACAAGTGTTCCAAATGAGCTAAA
* *** *
4143 AACTTCACAATTTTCTAATCTCACCGAAATGATTATAGTTAGGCCATAAA-AATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* ** * * **
4207 CATCAAGGGTTGCCAAATCGATTACGATTCAAAACGTCATTAATGGGCCTTGATAGGCCCAAAAT
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAAT
4272 AACAAGTGTTCCAAATGAGCTAAA
131 AACAAGTGTTCCAAATGAGCTAAA
*
4296 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAA
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * * ** * *
4361 TATTGAGGTTTACCAAATCGAAGACGATTTAAAACGTCACTAATGGGCCTTGATGGGCACAAAAT
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAAT
*
4426 AACAAGTGTTCTAAATGAGCTAAA
131 AACAAGTGTTCCAAATGAGCTAAA
* *
4450 AACTTCACAGCGGACTAATCTCACCAAAAAGATTATAGTTAGGCCATAAACAATGGAAAGAAAAA
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAG-AAAA
* * * * ** * *
4515 G-ATTGAGGTTTCCCAGATCGAAGACGATTCAAAACG-ACACTAATGGGCCTTGATAGACCAAAA
65 GCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTA-ACTAATGGGCCCCGATAGGCCCAAA
*
4578 ATAACAAGTGTTCCAAATGTGCTAAA
129 ATAACAAGTGTTCCAAATGAGCTAAA
** * *
4604 AACTTCACAGTGTTCTAATCTCACCGAAATGATTATAGTTAGGCTATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * *
4669 CATCAAAGGTTGCCAAATC-AATGACGATTCAAAACGTCACTAATGGGTCCCGATAGGCCCAAAA
66 CATCGAGGGTTGCCAAATCGAA-GACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAA
*
4733 TAACAATGTGTTTCAAATGAGCTAAAA
130 TAACAA-GTGTTCCAAATGAGCT-AAA
** * *
4760 AACTTCACAGTGTTCTAATCTCACCGAAATGATTACAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * *
4825 CATCAAGGGTTGCCAAATCGAAGACGATTC-AAACGGAACTAATGGGCCCCTAAAGGCCTAAAAT
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAAT
4889 AACAAGTGTTCCAAATGAGCTAAA
131 AACAAGTGTTCCAAATGAGCTAAA
* * *
4913 AACTTCACAGCGGACTAATCTCAGACAGAATGATTA-ATGTTAGGCCATAAACAATGGAAAG-AA
1 AACTTCACAGTGGACTAATCTCA-CCAAAATGATTATA-GTTAGGCCATAAACAATGGAAAGAAA
* * * * * *
4976 AGCATCGAGGGTTGCCAAATCGAATACGATTCAAAAGGGAACTAAT-GGCCCCGAAAGACCTAAA
64 AGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAA
5040 ATAACAAGTGTTCCAAATGAGCTAAA
129 ATAACAAGTGTTCCAAATGAGCTAAA
* *
5066 AATTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAA
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * * ** * *
5131 TATTGAGGTTTACCAAATCGAAGACGATTTAAAACGTCACTAATGGGCCTTGATGGGCACAAAAT
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAAT
*
5196 AACAAGTGTTCTAAATGAGCTAAAA
131 AACAAGTGTTCCAAATGAGCT-AAA
* *
5221 AACTTCACAGCGGACTAATCTCACCAAAAAAGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
1 AACTTCACAGTGGACTAATCTCACC-AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
* * * * * ** *
5286 ACATTGAGGTTTCCCAGATCGAAGACGATTCAAAACG-ACACTAATGGGCCTTGATAGACCCAAA
65 GCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTA-ACTAATGGGCCCCGATAGGCCCAAA
* *
5350 ATAACAAGTGTTGCAAATGAGCGAAA
129 ATAACAAGTGTTCCAAATGAGCTAAA
** *
5376 AACTTCACAGTGTTCTAATCTCACCGAAATGATTATAGTTAGGCCATAAA-AATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * **
5440 CATCAAGGGTTGCCAAATC-AATGACGATTCAAAACGTCACTAATGGGCCTTGATAGGCCCAAAA
66 CATCGAGGGTTGCCAAATCGAA-GACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAA
5504 TAACAAGTGTTCCAAATGAGCTAAA
130 TAACAAGTGTTCCAAATGAGCTAAA
5529 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACCAATGGAAAGAAAA
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAA-CAATGGAAAGAAAA
* * ** * * **
5594 GCATCAAGGGTTGCCAAATTGATTACGATTCAAAACGTCATTAATGGGCCTTGATAGGCCCAAAA
65 GCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAA
5659 TAACAAGTGTTCCAAATGAGCTAAA
130 TAACAAGTGTTCCAAATGAGCTAAA
5684 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGGACAAGAAA
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAAT-GGA-AAGAAA
* * * * *
5749 AGACATTGAGGTTTGCCAAATCGAAGACGATTCAATACGTCACTAATGAGCCCCGATAGGCCCAA
64 AG-CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAA
5814 AATAACAAGTGTTCCAAATGAGCTAAA
128 AATAACAAGTGTTCCAAATGAGCTAAA
*
5841 AACTTACACGGTGGACTAATACGTCACCAAAATAGATTATAGTTAGGCCATAAACAAATAGGAAA
1 AACTT-CACAGTGGACTAAT-C-TCACCAAAAT-GATTATAGTTAGGCCATAAAC-AAT-GGAAA
* * *
5906 GAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGG-CCCGATAGGCC
60 GAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCC
5970 CAAAATAACAAGTGTTCCAAAAT-AGCTAAA
125 CAAAATAACAAGTGTTCC-AAATGAGCTAAA
* *
6000 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTATGCCATAAACAGTGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * *
6065 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTCACTAAAGGGCCCCGATATGCCCAAAAT
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAAT
* * *
6130 ATCAAGTGTTCCAAATAAGCCAAA
131 AACAAGTGTTCCAAATGAGCTAAA
*
6154 AACTTCACAGTGGACTTATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * * *
6219 CATTGATGTTTCCCAAATCGAAGACGATTCAGAAC-AACACTAAGGGGCCCCGATAGGCCCAAAA
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTA-ACTAATGGGCCCCGATAGGCCCAAAA
* *
6283 TAACAAGTATTTCAAATGAGCTAAA
130 TAACAAGTGTTCCAAATGAGCTAAA
* *
6308 AACTTCACAGTGGACTAATCACAACAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * * *
6373 CATTGATGTTTCCCAAATCGAAGACGATTCAGAAC-AATACTAATGGGCCCCCGATAGGCCAAAA
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTA-ACTAATGGG-CCCCGATAGGCCCAAA
* * *
6437 ATAACAAGTATTTCAAATGAGCTAAT
129 ATAACAAGTGTTCCAAATGAGCTAAA
* *
6463 AACTCCACAGTGGACTAATCTCAACAAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
1 AACTTCACAGTGGACTAATCTC-ACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
* ** *
6528 GCATCAAGGGTTGCCAAATCGTTGACGATTCAAAACG-AGACTAATGGGCCCCGATAGGCTCAAA
65 GCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTA-ACTAATGGGCCCCGATAGGCCCAAA
* *
6592 ATTACAAGTGTTCCAAGTGAGCCTAAA
129 ATAACAAGTGTTCCAAATGAG-CTAAA
* *
6619 AACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTACGACCATAAACAATGGAAAGAAAA
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA-GGCCATAAACAATGGAAAGAAAA
* * * * ***
6684 GCATTGAGGTTTCCCAAATCGAAGACGACTCAAAACG-ACACTAATGGGCCTTAATAGGCCCAAA
65 GCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTA-ACTAATGGGCCCCGATAGGCCCAAA
*
6748 ATAACAAGTGTTCCAAATGAGCCAAA
129 ATAACAAGTGTTCCAAATGAGCTAAA
*
6774 AACTTCACAGTGGACTAATCTCACCGAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * **
6839 CATCAAAGGTTGCCAAATC-AATGACGATTCAAAACGTCACTAATGGGCCTTGATAGGCCCAAAA
66 CATCGAGGGTTGCCAAATCGAA-GACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAA
6903 TAACAAGTGTTCCAAATGAGCTAAA
130 TAACAAGTGTTCCAAATGAGCTAAA
* *** *
6928 AACTTCACAATTTTCTAATCTCACCGAAATGATTATAGTTAGGCCATAAA-AATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* ** * * **
6992 CATCAAGGGTTGCCAAATCGATTACGATTCAAAACGTCATTAATGGGCCTTGATAGGCCCAAAAT
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAAT
7057 AACAAGTGTTCCAAATGAGCTAAA
131 AACAAGTGTTCCAAATGAGCTAAA
*
7081 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAA
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * * ** * *
7146 TATTGAGGTTTACCAAATCGAAGACGATTTAAAACGTCACTAATGGGCCTTGATGGGCACAAAAT
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAAT
*
7211 AACAAGTGTTCTAAATGAGCTAAA
131 AACAAGTGTTCCAAATGAGCTAAA
* **
7235 AACTTCACAGCGGACTAATCTCACCAAAAAAATTATAGTTAGGCCATAAACAATGGAAAGAAAA-
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * ***
7299 CATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCTTTGATAGGCCCAAAAT
66 CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAAT
*
7364 AACAAGTGTTCCAAATGAGCGAAAA
131 AACAAGTGTTCCAAATGAGC-TAAA
7389 AACTTCACAGT
1 AACTTCACAGT
7400 TTTCT
Statistics
Matches: 4328, Mismatches: 410, Indels: 134
0.89 0.08 0.03
Matches are distributed among these distances:
152 35 0.01
153 917 0.21
154 1748 0.40
155 610 0.14
156 627 0.14
157 97 0.02
158 60 0.01
159 86 0.02
160 112 0.03
161 29 0.01
162 7 0.00
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.21
Consensus pattern (154 bp):
AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
CATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAAT
AACAAGTGTTCCAAATGAGCTAAA
Found at i:3011 original size:307 final size:307
Alignment explanation
Indices: 2441--7399 Score: 6704
Period size: 307 Copynumber: 16.0 Consensus size: 307
2431 ATTATTAATC
*
2441 AACTTCACAGTGGACTAATCTCACCAAAAGGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * *
2506 CATCCAGGGTTGCCAAATCAAAAACGATTCAAAACAGAGCTAATGGGCCCCGAAAGGCCTAAAAT
66 CATCGAGGGTTGCCAAATCGAATACGATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAAT
* *
2571 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAACAAAATGGTTATAGTTA
130 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA
* * **
2636 GGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACT
195 GGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACT
* * * * **
2701 AATGAGCCCCGAAAGACCTAAAATAACAAGTGTTCCAAATGAGCTATT
260 AATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
** * *
2749 AACTTTGCAGTGGACTAATCTCCCCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAA
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * *
2814 CATCGAGGGTTACGAAATCGAATACGATTCAAAACAGAACTAAT-GGCCCCGAAAGGCCTAAAAT
66 CATCGAGGGTTGCCAAATCGAATACGATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAAT
2878 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA
130 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA
* * * *
2943 GGCCATAAACAATGGAAAGAAAAGCATTGATGTTTCCCAAATCGAAGACGATTCAGAACATCACT
195 GGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACT
*
3008 AATGAGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
260 AATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
*
3056 AACTTACACGGTGGACTAATACGTCACCAAAATAGATTATAGTTAGGCCATAAACAAATAGGAAA
1 AACTT-CACAGTGGACTAAT-C-TCACCAAAAT-GATTATAGTTAGGCCATAAAC-AAT-GGAAA
* * *
3121 GAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGG-CCCGATAGGCC
60 GAAAAGCATCGAGGGTTGCCAAATCGAATACGATTCAAAAC-GAACTAATGGGCCCCGATAGGCC
3185 CAAAATAACAAGTGTTCCAAAAT-AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
124 CAAAATAACAAGTGTTCC-AAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
* * * *
3249 ATAGTTATGCCATAAACAGTGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAA
188 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
* * * * *
3314 CGTCACTAAAGGGCCCCGATATGCCCAAAATATCAAGTGTTCCAAATAAGCCAAA
253 CGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
*
3369 AACTTCACAGTGGACTTATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * * * *
3434 CATTGATGTTTCCCAAATCGAAGACGATTCAGAACAACACTAAGGGGCCCCGATAGGCCCAAAAT
66 CATCGAGGGTTGCCAAATCGAATACGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAAT
* * * *
3499 AACAAGTATTTCAAATGAGCTAAAAACTTCACAGTGGACTAATCACAACAAAATGATTATAGTTA
130 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA
* * * *
3564 GGCCATAAACAATGGAAAGAAAAGCATTGATGTTTCCCAAATCGAAGACGATTCAGAACAAT-AC
195 GGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GTCAC
* * * *
3628 TAATGGGCCCCCGATAGGCCAAAAATAACAAGTATTTCAAATGAGCTAAT
259 TAATGGG-CCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
* *
3678 AACTCCACAGTGGACTAATCTCAACAAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
1 AACTTCACAGTGGACTAATCTC-ACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
* * *
3743 GCATCAAGGGTTGCCAAATCG-TTGACGATTCAAAACGAGACTAATGGGCCCCGATAGGCTCAAA
65 GCATCGAGGGTTGCCAAATCGAAT-ACGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAA
* * *
3807 ATTACAAGTGTTCCAAGTGAGCCTAAAAACTTCACAGTGGACTAATCTCACTAAAATGATTATAG
128 ATAACAAGTGTTCCAAATGAG-CTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAG
* * * *
3872 TTACGACCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGACTCAAAACGA
192 TTA-GGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGT
*** *
3937 CACTAATGGGCCTTAATAGGCCCAAAATAACAAGTGTTCCAAATGAGCCAAA
256 CACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
*
3989 AACTTCACAGTGGACTAATCTCACCGAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * **
4054 CATCAAAGGTTGCCAAATC-AATGACGATTCAAAACGTCACTAATGGGCCTTGATAGGCCCAAAA
66 CATCGAGGGTTGCCAAATCGAAT-ACGATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAA
* *** *
4118 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATTTTCTAATCTCACCGAAATGATTATAGTT
129 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTT
** * ** *
4183 AGGCCATAAA-AATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATTACGATTCAAAACGTCAT
194 AGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCAC
**
4247 TAATGGGCCTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
259 TAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
*
4296 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAA
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * * * ** * *
4361 TATTGAGGTTTACCAAATCGAAGACGATTTAAAACGTCACTAATGGGCCTTGATGGGCACAAAAT
66 CATCGAGGGTTGCCAAATCGAATACGATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAAT
* * *
4426 AACAAGTGTTCTAAATGAGCTAAAAACTTCACAGCGGACTAATCTCACCAAAAAGATTATAGTTA
130 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA
* * *
4491 GGCCATAAACAATGGAAAGAAAAAG-ATTGAGGTTTCCCAGATCGAAGACGATTCAAAACGACAC
195 GGCCATAAACAATGGAAAG-AAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCAC
** * * *
4555 TAATGGGCCTTGATAGACCAAAAATAACAAGTGTTCCAAATGTGCTAAA
259 TAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
** * *
4604 AACTTCACAGTGTTCTAATCTCACCGAAATGATTATAGTTAGGCTATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * *
4669 CATCAAAGGTTGCCAAATC-AATGACGATTCAAAACGTCACTAATGGGTCCCGATAGGCCCAAAA
66 CATCGAGGGTTGCCAAATCGAAT-ACGATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAA
* ** * *
4733 TAACAATGTGTTTCAAATGAGCTAAAAAACTTCACAGTGTTCTAATCTCACCGAAATGATTACAG
129 TAACAA-GTGTTCCAAATGAGCT-AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAG
** * **
4798 TTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGAAGACGATTC-AAACGGA
192 TTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTC
* * *
4862 ACTAATGGGCCCCTAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAAA
257 ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
* * *
4913 AACTTCACAGCGGACTAATCTCAGACAGAATGATTA-ATGTTAGGCCATAAACAATGGAAAG-AA
1 AACTTCACAGTGGACTAATCTCA-CCAAAATGATTATA-GTTAGGCCATAAACAATGGAAAGAAA
* * * *
4976 AGCATCGAGGGTTGCCAAATCGAATACGATTCAAAAGGGAACTAAT-GGCCCCGAAAGACCTAAA
64 AGCATCGAGGGTTGCCAAATCGAATACGATTCAAAA-CGAACTAATGGGCCCCGATAGGCCCAAA
*
5040 ATAACAAGTGTTCCAAATGAGCTAAAAATTTCACAGTGGACTAATCTCACCAAAATGATTATAGT
128 ATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGT
** * *
5105 TAGGCCATAAACAATGGAAAGAAAAATATTGAGGTTTACCAAATCGAAGACGATTTAAAACGTCA
193 TAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCA
** * * *
5170 CTAATGGGCCTTGATGGGCACAAAATAACAAGTGTTCTAAATGAGCTAAAA
258 CTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCT-AAA
* *
5221 AACTTCACAGCGGACTAATCTCACCAAAAAAGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
1 AACTTCACAGTGGACTAATCTCACC-AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
* * * * * * ** *
5286 ACATTGAGGTTTCCCAGATCGAAGACGATTCAAAACGACACTAATGGGCCTTGATAGACCCAAAA
65 GCATCGAGGGTTGCCAAATCGAATACGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAA
* * ** *
5351 TAACAAGTGTTGCAAATGAGCGAAAAACTTCACAGTGTTCTAATCTCACCGAAATGATTATAGTT
129 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTT
** *
5416 AGGCCATAAA-AATGGAAAGAAAAGCATCAAGGGTTGCCAAATC-AATGACGATTCAAAACGTCA
194 AGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAA-GACGATTCAAAACGTCA
**
5479 CTAATGGGCCTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
258 CTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
5529 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACCAATGGAAAGAAAA
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAA-CAATGGAAAGAAAA
* * * * * **
5594 GCATCAAGGGTTGCCAAATTGATTACGATTCAAAACGTCATTAATGGGCCTTGATAGGCCCAAAA
65 GCATCGAGGGTTGCCAAATCGAATACGATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAA
5659 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTT
129 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTT
*
5724 AGGCCATAAACAATAGGACAAGAAAAGACATTGAGGTTTGCCAAATCGAAGACGATTCAATACGT
194 AGGCCATAAACAAT-GGA-AAGAAAAG-CATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGT
*
5789 CACTAATGAGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
256 CACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
*
5841 AACTTACACGGTGGACTAATACGTCACCAAAATAGATTATAGTTAGGCCATAAACAAATAGGAAA
1 AACTT-CACAGTGGACTAAT-C-TCACCAAAAT-GATTATAGTTAGGCCATAAAC-AAT-GGAAA
* * *
5906 GAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGG-CCCGATAGGCC
60 GAAAAGCATCGAGGGTTGCCAAATCGAATACGATTCAAAAC-GAACTAATGGGCCCCGATAGGCC
5970 CAAAATAACAAGTGTTCCAAAAT-AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
124 CAAAATAACAAGTGTTCC-AAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
* * * *
6034 ATAGTTATGCCATAAACAGTGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAA
188 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
* * * * *
6099 CGTCACTAAAGGGCCCCGATATGCCCAAAATATCAAGTGTTCCAAATAAGCCAAA
253 CGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
*
6154 AACTTCACAGTGGACTTATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * * * *
6219 CATTGATGTTTCCCAAATCGAAGACGATTCAGAACAACACTAAGGGGCCCCGATAGGCCCAAAAT
66 CATCGAGGGTTGCCAAATCGAATACGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAAT
* * * *
6284 AACAAGTATTTCAAATGAGCTAAAAACTTCACAGTGGACTAATCACAACAAAATGATTATAGTTA
130 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA
* * * *
6349 GGCCATAAACAATGGAAAGAAAAGCATTGATGTTTCCCAAATCGAAGACGATTCAGAACAAT-AC
195 GGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GTCAC
* * * *
6413 TAATGGGCCCCCGATAGGCCAAAAATAACAAGTATTTCAAATGAGCTAAT
259 TAATGGG-CCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
* *
6463 AACTCCACAGTGGACTAATCTCAACAAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
1 AACTTCACAGTGGACTAATCTC-ACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
* * *
6528 GCATCAAGGGTTGCCAAATCG-TTGACGATTCAAAACGAGACTAATGGGCCCCGATAGGCTCAAA
65 GCATCGAGGGTTGCCAAATCGAAT-ACGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAA
* * *
6592 ATTACAAGTGTTCCAAGTGAGCCTAAAAACTTCACAGTGGACTAATCTCACTAAAATGATTATAG
128 ATAACAAGTGTTCCAAATGAG-CTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAG
* * * *
6657 TTACGACCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGACTCAAAACGA
192 TTA-GGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGT
*** *
6722 CACTAATGGGCCTTAATAGGCCCAAAATAACAAGTGTTCCAAATGAGCCAAA
256 CACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
*
6774 AACTTCACAGTGGACTAATCTCACCGAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * **
6839 CATCAAAGGTTGCCAAATC-AATGACGATTCAAAACGTCACTAATGGGCCTTGATAGGCCCAAAA
66 CATCGAGGGTTGCCAAATCGAAT-ACGATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAA
* *** *
6903 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATTTTCTAATCTCACCGAAATGATTATAGTT
129 TAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTT
** * ** *
6968 AGGCCATAAA-AATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATTACGATTCAAAACGTCAT
194 AGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCAC
**
7032 TAATGGGCCTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
259 TAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
*
7081 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAA
1 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * * * * ** * *
7146 TATTGAGGTTTACCAAATCGAAGACGATTTAAAACGTCACTAATGGGCCTTGATGGGCACAAAAT
66 CATCGAGGGTTGCCAAATCGAATACGATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAAT
* * **
7211 AACAAGTGTTCTAAATGAGCTAAAAACTTCACAGCGGACTAATCTCACCAAAAAAATTATAGTTA
130 AACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA
*
7276 GGCCATAAACAATGGAAAGAAAA-CATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGTCACT
195 GGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACT
*** *
7340 AATGGGCTTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCGAAAA
260 AATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGC-TAAA
7389 AACTTCACAGT
1 AACTTCACAGT
7400 TTTCT
Statistics
Matches: 4125, Mismatches: 457, Indels: 138
0.87 0.10 0.03
Matches are distributed among these distances:
306 88 0.02
307 1007 0.24
308 872 0.21
309 494 0.12
310 680 0.16
311 227 0.06
312 239 0.06
313 327 0.08
314 15 0.00
315 14 0.00
316 109 0.03
317 52 0.01
318 1 0.00
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.21
Consensus pattern (307 bp):
AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
CATCGAGGGTTGCCAAATCGAATACGATTCAAAACGAACTAATGGGCCCCGATAGGCCCAAAATA
ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAG
GCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTA
ATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
Done.