Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011606.1 Corchorus olitorius cultivar O-4 contig11639, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1905
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Found at i:402 original size:154 final size:154
Alignment explanation
Indices: 1--1905 Score: 2750
Period size: 154 Copynumber: 12.3 Consensus size: 154
* * **
1 GTCCACTGTGAAGTTTTTAGCTCATCTGGAACACTTGTAATTTTGGGCCTATCAAGGCCCATTAG
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
* * *
66 TGACGTTTTGAATCGTCTTCGATTTGG-TAACCTTCGATGCCTTTCTTTCCATTGTTTATGGCCT
66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACC-TCAATGCTTTTCTTTCCATTGTTTATGGCCT
130 AACTATAATCATTTTGGTGAGATTA
130 AACTATAATCATTTTGGTGAGATTA
* *
155 GTCCACTGTGAAGTTTTCTAGCTCATATGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTA
1 GTCCACTGTGAAGTTTT-TAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTA
* * * *
220 GTGACGTTTTGAATCGTCTTTGATTTGGCAAACCTCAAGGCTTTTCTTTCCATTGTGTACGGCCT
65 GTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCT
285 AACTATAATCATTTTGGTGAGATTA
130 AACTATAATCATTTTGGTGAGATTA
* * * * * *
310 CTCCTCTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCAGGGCCCATCAA
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
*
375 TGACGTTTTGAATCGTCTTCGATTTGGCAATTCC-CAATGCTTTTCTTTCCATTGTTTATGGCCT
66 TGACGTTTTGAATCGTCTTCGATTTGGCAA-ACCTCAATGCTTTTCTTTCCATTGTTTATGGCCT
439 AACTATAATCATTTTAGG-GAGATTA
130 AACTATAATCATTTT-GGTGAGATTA
* * * *
464 GTCCACTGGGAAGTTTTTAGCTCATTTGGAACAGTTGTTATTTTGTGCCTATCGAGGCCCATTAG
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
** *
529 TTCCGTTTTGAATTGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
*
594 CCTATAATCATTTTGGTGAGATTA
131 ACTATAATCATTTTGGTGAGATTA
* * *
618 GTCCACTGGGAAGTTTTTAGCTCATTTGGAACACATGTTATTTTGGGCCTATCGGGGCCCATCAG
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
* * *
683 TGACGTTTTGAATCGTCTTTGATTTGGCAAACCTCAATTCTTTTATTTCCATTGTTTATGGCCTA
66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
*
748 ACTATAATCATTTTGGGGAGATTA
131 ACTATAATCATTTTGGTGAGATTA
* * * *
772 GTTCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTAGGCCTATCGGAGACCATTA-
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
* * *
836 TGACGTTTTGAATCGTCTTCGATTTGGCTAACCTCAATGCTTTTCTTTCCATTGTGTACGGCCTA
66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
*
901 ACTATAATCATTTTGTTGAGATTA
131 ACTATAATCATTTTGGTGAGATTA
** ** * *
925 GTCTTCTGTGAAGTTTTTAGCAGATTTGGAACACTTCTTATTTTGGGCCTATCGGGGCCCATCAG
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
* * * *
990 TGATGTTTTGAATCGTCTTCGATTTGGCAAACCACATTTCTTTTCTTTCCATTGTTTATGGCCTA
66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
1055 ACTATAATCATTTTGGTGAGATTA
131 ACTATAATCATTTTGGTGAGATTA
* * *
1079 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGTCCTATCGGGGTCCATCAG
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
* * * *
1144 TGACGTTTTGAATCGTCTTCGATTTGGCAAAACTCAATGC-CTTCCTTCTCATTATTTATGGCCT
66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTC-CATTGTTTATGGCCT
1208 AACTATAATCATTTTGGTGAGATTA
130 AACTATAATCATTTTGGTGAGATTA
* * * * *
1233 GTCCATTGTGAAGTTTTGAGCTC--CTGGAACACTTGTTATTTTAGGCCTTTCGGGGCCCATTAG
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
** * *
1296 TTCCGTTTTGAATCGTCTTCGATTTGTCAATTCC-CAATGTCTTTTCTTTCCATTGTTTATGGCC
66 TGACGTTTTGAATCGTCTTCGATTTGGCAA-ACCTCAATG-CTTTTCTTTCCATTGTTTATGGCC
*
1360 TAACTATAATTATTTTGGTGAGATTA
129 TAACTATAATCATTTTGGTGAGATTA
* * ***
1386 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACATTTGTTATTTTGGGCTTATCGGTTACCATTAG
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
* * * * *
1451 TGACGTTTTTAATCGTCTTCGATTTGGC-AACCTTCGATGCCTTTCTTTTCATTATTTATGGCCT
66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACC-TCAATGCTTTTCTTTCCATTGTTTATGGCCT
1515 AACTATAATCATTTTGGTGAGATTA
130 AACTATAATCATTTTGGTGAGATTA
* * * * *
1540 GTCCACTGTGAAGTTTTGAGCTCAATTGGAACACTTTTTAATTTGGGCCTTTCGGGGCCCATTAG
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
** * * * *
1605 TTCCGTTTTGAATCGTGTTCGATTTGTCAATTCC-CAATGCTTTTCTTTCAATTGTTTATGGCCT
66 TGACGTTTTGAATCGTCTTCGATTTGGCAA-ACCTCAATGCTTTTCTTTCCATTGTTTATGGCCT
1669 AACTATAATCATTTTGGTGAGATTA
130 AACTATAATCATTTTGGTGAGATTA
*
1694 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTTGGGTCCTATCGGGGCCCATC
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA-TTTTGGG-CCTATCGGGGCCCATT
*
1759 AGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATTCTTTTCTTTCCATTTGTTTATGGC
64 AGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCA-TTGTTTATGGC
* *
1824 CTAACTATAACCATTTTTGTTGAGATTA
128 CTAACTATAATCA-TTTTGGTGAGATTA
1852 GTCCACTGTGAAGTTTTTTAGCTCATTTGGAACACTTGTTATTTTTGGGCCTAT
1 GTCCACTGTGAAG-TTTTTAGCTCATTTGGAACACTTGTTA-TTTTGGGCCTAT
Statistics
Matches: 1553, Mismatches: 175, Indels: 42
0.88 0.10 0.02
Matches are distributed among these distances:
152 66 0.04
153 208 0.13
154 920 0.59
155 208 0.13
156 63 0.04
157 23 0.01
158 31 0.02
159 34 0.02
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (154 bp):
GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
ACTATAATCATTTTGGTGAGATTA
Found at i:1035 original size:461 final size:462
Alignment explanation
Indices: 1--1905 Score: 2756
Period size: 461 Copynumber: 4.1 Consensus size: 462
* * *
1 GTCCACTGTGAAGTTTTTAGCTCATCTGGAACACTTGTAATTTTGGGCCTATCAAGGCCCATTAG
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAG
*
66 TGACGTTTTGAATCGTCTTCGATTTGG-TAACCTTCGATGCCTTTCTTTCCATTGTTTATGGCCT
66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTTCGATGCCTTTCTTTCCATTGTTTATGGCCT
*
130 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTCTAGCTCATATGGAACACTTGTT
131 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTT-TAGCTCATTTGGAACACTTGTT
* * * *
195 ATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTTGATTTGGCAAACCTCAAGG
195 ATTTTGGGCCTATCGGGGCCCATCAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATG
* * * *
260 CTTTTCTTTCCATTGTGTACGGCCTAACTATAATCATTTTGGTGAGATTACTCCTCTGTGAAGTT
260 CTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTT
* * * * *
325 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCAGGGCCCATCAATGACGTTTTGAATCG
325 TTTAGCTCATTTGGAACACTTGTTATTTTAGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCG
390 TCTTCGATTTGGCAATTCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTA
390 TCTTCGATTTGGCAA-TCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTT-
*
455 G-GGAGATTA
453 GTTGAGATTA
* * *
464 GTCCACTGGGAAGTTTTTAGCTCATTTGGAACAGTTGTTATTTTGTGCCTATCGAGGCCCATTAG
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAG
** * * *
529 TTCCGTTTTGAATTGTCTTCGATTTGGCAAACC-TCAATGCTTTTCTTTCCATTGTTTATGGCCT
66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTTCGATGCCTTTCTTTCCATTGTTTATGGCCT
* * *
593 ACCTATAATCATTTTGGTGAGATTAGTCCACTGGGAAGTTTTTAGCTCATTTGGAACACATGTTA
131 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA
* *
658 TTTTGGGCCTATCGGGGCCCATCAGTGACGTTTTGAATCGTCTTTGATTTGGCAAACCTCAATTC
196 TTTTGGGCCTATCGGGGCCCATCAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC
* * *
723 TTTTATTTCCATTGTTTATGGCCTAACTATAATCATTTTGGGGAGATTAGTTCACTGTGAAGTTT
261 TTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
* *
788 TTAGCTCATTTGGAACACTTGTTATTTTAGGCCTATCGGAGACCATTA-TGACGTTTTGAATCGT
326 TTAGCTCATTTGGAACACTTGTTATTTTAGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGT
* *
852 CTTCGATTTGGCTAA-CCTCAATGCTTTTCTTTCCATTGTGTACGGCCTAACTATAATCATTTTG
391 CTTCGATTTGGC-AATCC-CAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG
916 TTGAGATTA
454 TTGAGATTA
** ** * * *
925 GTCTTCTGTGAAGTTTTTAGCAGATTTGGAACACTTCTTATTTTGGGCCTATCGGGGCCCATCAG
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAG
* * * *
990 TGATGTTTTGAATCGTCTTCGATTTGGCAAACC-AC-ATTTCTTTTCTTTCCATTGTTTATGGCC
66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTTCGA-TGCCTTTCTTTCCATTGTTTATGGCC
1053 TAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
130 TAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
* * *
1118 ATTTTGGTCCTATCGGGGTCCATCAGTGACGTTTTGAATCGTCTTCGATTTGGCAAAACTCAATG
195 ATTTTGGGCCTATCGGGGCCCATCAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATG
* * * *
1183 C-CTTCCTTCTCATTATTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGT
260 CTTTTCTTTC-CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT
* * * **
1247 TTTGAGCTC--CTGGAACACTTGTTATTTTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATC
324 TTTTAGCTCATTTGGAACACTTGTTATTTTAGGCCTATCGGGGCCCATTAGTGACGTTTTGAATC
* *
1310 GTCTTCGATTTGTCAATTCCCAATGTCTTTTCTTTCCATTGTTTATGGCCTAACTATAATTATTT
389 GTCTTCGATTTGGCAA-TCCCAATG-CTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTT
*
1375 TGGTGAGATTA
452 TGTTGAGATTA
* * **
1386 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACATTTGTTATTTTGGGCTTATCG-GTTACCATTA
1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAG-GCCCATTA
* * *
1450 GTGACGTTTTTAATCGTCTTCGATTTGGC-AACCTTCGATGCCTTTCTTTTCATTATTTATGGCC
65 GTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTTCGATGCCTTTCTTTCCATTGTTTATGGCC
* * *
1514 TAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTGAGCTCAATTGGAACACTTTTT
130 TAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
* * * ** * * *
1579 AATTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGTGTTCGATTTGTCAATTCC-CAAT
195 ATTTTGGGCCTATCGGGGCCCATCAGTGACGTTTTGAATCGTCTTCGATTTGGCAA-ACCTCAAT
*
1643 GCTTTTCTTTCAATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT
259 GCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT
* *
1708 TTTTAGCTCATTTGGAACACTTGTTACTTTTGGGTCCTATCGGGGCCCATCAGTGACGTTTTGAA
324 TTTTAGCTCATTTGGAACACTTGTTA-TTTTAGG-CCTATCGGGGCCCATTAGTGACGTTTTGAA
* * *
1773 TCGTCTTCGATTTGGCAAACCTCAATTCTTTTCTTTCCATTTGTTTATGGCCTAACTATAACCAT
387 TCGTCTTCGATTTGGCAATCC-CAATGCTTTTCTTTCCA-TTGTTTATGGCCTAACTATAATCA-
1838 TTTTGTTGAGATTA
449 TTTTGTTGAGATTA
1852 GTCCACTGTGAAGTTTTTTAGCTCATTTGGAACACTTGTTATTTTTGGGCCTAT
1 GTCCACTGTGAAG-TTTTTAGCTCATTTGGAACACTTGTTA-TTTTGGGCCTAT
Statistics
Matches: 1288, Mismatches: 130, Indels: 43
0.88 0.09 0.03
Matches are distributed among these distances:
459 37 0.03
460 44 0.03
461 693 0.54
462 192 0.15
463 166 0.13
464 24 0.02
465 69 0.05
466 26 0.02
467 26 0.02
468 11 0.01
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (462 bp):
GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAG
TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTTCGATGCCTTTCTTTCCATTGTTTATGGCCT
AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA
TTTTGGGCCTATCGGGGCCCATCAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC
TTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
TTAGCTCATTTGGAACACTTGTTATTTTAGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGT
CTTCGATTTGGCAATCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGTT
GAGATTA
Found at i:1173 original size:615 final size:615
Alignment explanation
Indices: 1--1905 Score: 2865
Period size: 615 Copynumber: 3.1 Consensus size: 615
* **
1 GTCCACTGTGAAGTTTTTAGCTCATCTGGAACACTTGTAATTTTGGGCCTATCAAGGCCCATTAG
1 GTCCACTGTGAAGTTTTTAGCTCATCTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
* * * *
66 TGACGTTTTGAATCGTCTTCGATTTGG-TAACCTTCGATGCCTTTCTTTCCATTGTTTATGGCCT
66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACC-TCAATTCTTTTCTTTCCATTGTTTATGGCCT
*
130 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTCTAGCTCATATGGAACACTTGTT
130 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTT-TAGCTCATTTGGAACACTTGTT
* * *
195 ATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTTGATTTGGCAAACCTCAAGG
194 ATTTTGGGCCTATCGGAGACCATTAGTGACGTTTTGAATCGTCTTCGATTTGGC-AACCTCAATG
*
260 CTTTTCTTTCCATTGTGTACGGCCTAACTATAATCATTTTGGTGAGATTACTCCTCTGTGAAGTT
258 CTTTTCTTTCCATTGTGTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCTCTGTGAAGTT
* * *
325 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCAGGGCCCATCAATGACGTTTTGAATCG
323 TTTAGCTCATTTGGAACACTTCTTATTTTGGGCCTTTCGGGGCCCATCAGTGACGTTTTGAATCG
390 TCTTCGATTTGGCAATTCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTA
388 TCTTCGATTTGGCAATTCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTT-
* *
455 GG-GAGATTAGTCCACTGGGAAGTTTTTAGCTCATTTGGAACAGTTGTTATTTT-GTGCCTATCG
452 GGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGT-CCTATCG
* * ** *
518 AGGCCCATTAGTTCCGTTTTGAATTGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTG
516 GGGCCCATCAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTG
*
583 TTTATGGCCTACCTATAATCATTTTGGTGAGATTA
581 TTTATGGCCTAACTATAATCATTTTGGTGAGATTA
* * * *
618 GTCCACTGGGAAGTTTTTAGCTCATTTGGAACACATGTTATTTTGGGCCTATCGGGGCCCATCAG
1 GTCCACTGTGAAGTTTTTAGCTCATCTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
* *
683 TGACGTTTTGAATCGTCTTTGATTTGGCAAACCTCAATTCTTTTATTTCCATTGTTTATGGCCTA
66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATTCTTTTCTTTCCATTGTTTATGGCCTA
* *
748 ACTATAATCATTTTGGGGAGATTAGTTCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTAT
131 ACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTAT
*
813 TTTAGGCCTATCGGAGACCATTA-TGACGTTTTGAATCGTCTTCGATTTGGCTAACCTCAATGCT
196 TTTGGGCCTATCGGAGACCATTAGTGACGTTTTGAATCGTCTTCGATTTGGC-AACCTCAATGCT
* *
877 TTTCTTTCCATTGTGTACGGCCTAACTATAATCATTTTGTTGAGATTAGTCTTCTGTGAAGTTTT
260 TTTCTTTCCATTGTGTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCTCTGTGAAGTTTT
** * *
942 TAGCAGATTTGGAACACTTCTTATTTTGGGCCTATCGGGGCCCATCAGTGATGTTTTGAATCGTC
325 TAGCTCATTTGGAACACTTCTTATTTTGGGCCTTTCGGGGCCCATCAGTGACGTTTTGAATCGTC
* * *
1007 TTCGATTTGGCAA-ACCACATTTCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGG
390 TTCGATTTGGCAATTCC-CAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGG
1071 TGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGTCCTATCGGGG
454 TGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGTCCTATCGGGG
* * * * *
1136 TCCATCAGTGACGTTTTGAATCGTCTTCGATTTGGCAAAACTCAATGC-CTTCCTTCTCATTATT
519 CCCATCAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTC-CATTGTT
1200 TATGGCCTAACTATAATCATTTTGGTGAGATTA
583 TATGGCCTAACTATAATCATTTTGGTGAGATTA
* * * *
1233 GTCCATTGTGAAGTTTTGAGCTC--CTGGAACACTTGTTATTTTAGGCCTTTCGGGGCCCATTAG
1 GTCCACTGTGAAGTTTTTAGCTCATCTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
** * *
1296 TTCCGTTTTGAATCGTCTTCGATTTGTCAATTCC-CAATGTCTTTTCTTTCCATTGTTTATGGCC
66 TGACGTTTTGAATCGTCTTCGATTTGGCAA-ACCTCAAT-TCTTTTCTTTCCATTGTTTATGGCC
* *
1360 TAACTATAATTATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACATTTGTT
129 TAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
* ** * *
1425 ATTTTGGGCTTATCGGTTACCATTAGTGACGTTTTTAATCGTCTTCGATTTGGCAACCTTCGATG
194 ATTTTGGGCCTATCGGAGACCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAACC-TCAATG
* * * * * *
1490 CCTTTCTTTTCATTATTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTT
258 CTTTTCTTTCCATTGTGTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCTCTGTGAAGTT
* * * * * **
1555 TTGAGCTCAATTGGAACACTTTTTAATTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCG
323 TTTAGCTCATTTGGAACACTTCTTATTTTGGGCCTTTCGGGGCCCATCAGTGACGTTTTGAATCG
* * *
1620 TGTTCGATTTGTCAATTCCCAATGCTTTTCTTTCAATTGTTTATGGCCTAACTATAATCATTTTG
388 TCTTCGATTTGGCAATTCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG
1685 GTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTTGGGTCCTATCG
453 GTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA-TTTT-GGTCCTATCG
*
1750 GGGCCCATCAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATTCTTTTCTTTCCATTT
516 GGGCCCATCAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCA-TT
* *
1815 GTTTATGGCCTAACTATAACCATTTTTGTTGAGATTA
580 GTTTATGGCCTAACTATAATCA-TTTTGGTGAGATTA
*
1852 GTCCACTGTGAAGTTTTTTAGCTCATTTGGAACACTTGTTATTTTTGGGCCTAT
1 GTCCACTGTGAAG-TTTTTAGCTCATCTGGAACACTTGTTA-TTTTGGGCCTAT
Statistics
Matches: 1160, Mismatches: 109, Indels: 32
0.89 0.08 0.02
Matches are distributed among these distances:
613 65 0.06
614 122 0.11
615 620 0.53
616 52 0.04
617 211 0.18
618 32 0.03
619 25 0.02
620 9 0.01
622 14 0.01
623 10 0.01
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (615 bp):
GTCCACTGTGAAGTTTTTAGCTCATCTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATTCTTTTCTTTCCATTGTTTATGGCCTA
ACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTAT
TTTGGGCCTATCGGAGACCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAACCTCAATGCTT
TTCTTTCCATTGTGTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCTCTGTGAAGTTTTT
AGCTCATTTGGAACACTTCTTATTTTGGGCCTTTCGGGGCCCATCAGTGACGTTTTGAATCGTCT
TCGATTTGGCAATTCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTG
AGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGTCCTATCGGGGCC
CATCAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
GGCCTAACTATAATCATTTTGGTGAGATTA
Done.