Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011622.1 Corchorus olitorius cultivar O-4 contig11655, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2600
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25


Found at i:1161 original size:6 final size:6

Alignment explanation


    Indices: 1098--1144  Score: 76
    Period size: 6  Copynumber: 7.8  Consensus size: 6

       1088 CGAGAGGGAG

                                     *                     *      
       1098 GGTAAT GGTAAT GGTAAT GGTAGT GGTAAT GGTAAT GGTAAA GGTAA
          1 GGTAAT GGTAAT GGTAAT GGTAAT GGTAAT GGTAAT GGTAAT GGTAA

       1145 CCACGGTAAT


Statistics
Matches: 38,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   38  1.00

ACGTcount: A:0.34, C:0.00, G:0.36, T:0.30


Consensus pattern (6 bp):   
GGTAAT
Done.