Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011624.1 Corchorus olitorius cultivar O-4 contig11657, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 978

Length: 1630
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36


Found at i:1057 original size:154 final size:154

Alignment explanation


    Indices: 731--1630  Score: 1545
    Period size: 154  Copynumber: 5.9  Consensus size: 154

        721 TGGCGCATCA

                         *                                                   
        731 CCTCAATGCTTTTTTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
          1 CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT

                            *                                                
        796 GTGAAGTTTTTAGCTCGTTTGGAACACTTGTTATTTTGGGCCTATC-GGGCCCATTAGTTCCGTT
         66 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTT

                                   *
        860 TTGAATCGTCTTCGATTTGGCAAA
        131 TTGAATCGTCTTCGATTTGGCAAC

                    *                                                        
        884 CCTCAATGTTTTTCTTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCAC
          1 CCTCAATGCTTTTC-TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCAC

                                                                 *           
        949 TGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCTATTAGTTCCGT
         65 TGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGT

                                     
       1014 TTTGAATCGTCTTCGATTTGGCAAC
        130 TTTGAATCGTCTTCGATTTGGCAAC

                    *                                           *            
       1039 CCTCAATGTTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGTGATTAGTCCACT
          1 CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT

                                                     *     *  *              
       1104 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCATATCGAGGACCATTAGTTCCGTT
         66 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTT

                              *     
       1169 TTGAATCGTCTTCGATTTTGCAAC
        131 TTGAATCGTCTTCGATTTGGCAAC

               *                *     *                                   *  
       1193 CCTGAATGCTTTTCTTTCCAATGTTTCTGGCCTAACTATAATCATTTTGGT-ACGATTAGTCAAC
          1 CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA-GATTAGTCCAC

             *                                          *                    
       1257 TTTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGT
         65 TGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGT

                               *     
       1322 TTTGAATCGTCTTCGATTTCGCAAC
        130 TTTGAATCGTCTTCGATTTGGCAAC

                 *                                                           
       1347 CCTCAGTGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
          1 CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT

                                         *                       *        *  
       1412 GTGAAGTTTTTAGCTCATTTGGAACACTTCTTATTTTGGGCCTATCGGGGCCCTTTAGTTCCCTT
         66 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTT

                                   *
       1477 TTGAATCGTCTTCGATTTGGCAAA
        131 TTGAATCGTCTTCGATTTGGCAAC

                                                                             
       1501 CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
          1 CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT

                            *                                                
       1566 GTGAAG-TTTTAGCTCGTTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTT
         66 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTT

             
       1630 T
        131 T


Statistics
Matches: 703,  Mismatches: 40, Indels: 8
        0.94            0.05        0.01

Matches are distributed among these distances:
 153   67  0.10
 154  581  0.83
 155   55  0.08

ACGTcount: A:0.19, C:0.20, G:0.19, T:0.42


Consensus pattern (154 bp):   
CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTT
TTGAATCGTCTTCGATTTGGCAAC

Done.