Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011634.1 Corchorus olitorius cultivar O-4 contig11667, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 737

Length: 1229
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40


Found at i:281 original size:154 final size:154

Alignment explanation


    Indices: 1--1229  Score: 2009
    Period size: 154  Copynumber: 8.0  Consensus size: 154

                                            *                   *     *      
          1 TTAACTCTTTTGGAACAATTGTAATTTTGGGCGTTTCGGGGCCCATTAGATCTGTTTTCAATCGA
          1 TTAACTCTTTTGGAACAATTGTAATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGA

             *                                           *                   
         66 CGTCGATTTGGCAAACCTCAAAG-TTTATCTTTCCATTGTTTATGACCTAACTATAATCATTTTG
         66 CTTCGATTTGGCAAACCTCAAAGCTTT-TCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG

                                     
        130 GTGAGATATGTCCACTGTGAAGTTT
        130 GTGAGATATGTCCACTGTGAAGTTT

                                                  *                          
        155 TTAACTCTTTTGGAACAATTGTAATTTTGGGCCTTTCGAGGCCCATTAGATCCGTTTTGAATCGA
          1 TTAACTCTTTTGGAACAATTGTAATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGA

                                             *                               
        220 CTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCAATTGTTTATGGCCTAACTATAATCATTTTGG
         66 CTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGG

               *                    
        285 TGAAATATGTCCACTGTGAAGTTT
        131 TGAGATATGTCCACTGTGAAGTTT

                                          * *                *               
        309 TTAACTCTTTTGGAACAATTGTAATTTTGGTCATTTCGGGGCCCATTAGTTCCGTTTTGAATCGA
          1 TTAACTCTTTTGGAACAATTGTAATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGA

                  *                      *                                   
        374 CTTCGAATTGGCAAACCTCAAAGCTTTTCATTCCATTGTTTATGGCCTAACTATAATCATTTTGG
         66 CTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGG

                                    
        439 TGAGATATGTCCACTGTGAAGTTT
        131 TGAGATATGTCCACTGTGAAGTTT

                                                               *             
        463 TTAACTCTTTTGGAACAATTGTAATTTTGGGCCTTTCGGGGCCCATTAGATTCGTTTTGAATCGA
          1 TTAACTCTTTTGGAACAATTGTAATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGA

                                             *                         *     
        528 CTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCAATTGTTTATGGCCTAACTATAATCACTTTGG
         66 CTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGG

                           *        
        593 TGAGATATGTCCACTTTGAAGTTT
        131 TGAGATATGTCCACTGTGAAGTTT

                                                               *             
        617 TTAACTCTTTTGGAACAATTGTAATTTTGGGCCTTTCGGGGCCCATTAGATTCGTTTTGAATCGA
          1 TTAACTCTTTTGGAACAATTGTAATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGA

                                   *                                   *  *  
        682 CTTCGATTTGGTCAAACCTCAAATCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCCTTATG
         66 CTTCGATTTGG-CAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG

                                     
        747 GTGAGATATGTCCACTGTGAAGTTT
        130 GTGAGATATGTCCACTGTGAAGTTT

                                            *        *   *   *  *            
        772 TTAACTCTTTTGGAACAATTGTAATTTTGGGCGTTTC-GGGACCACTAGTTCTGTTTTGAATCGA
          1 TTAACTCTTTTGGAACAATTGTAATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGA

                                  *                      *                   
        836 CTTCGATTTGGCAAACCTCAAAACTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGG
         66 CTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGG

              *                      
        901 TGTGATATGTCCACTGTGTAAGTTT
        131 TGAGATATGTCCACTGTG-AAGTTT

               *   *         *    *                       *  *   *           
        926 TTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATCAGTTCCATTTTGAATCGA
          1 TTAACTCTTTTGGAACAATTGTAATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGA

                                                       *                     
        991 CTTCGATTTGGCAAACCT-AAAGC-TTTC-TTCCATTGTTTATTGCCTAACTATAATCATTTTGG
         66 CTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGG

                                    
       1053 TGAGATATGTCCACTGTGAAGTTT
        131 TGAGATATGTCCACTGTGAAGTTT

               *   *            *                 *            *             
       1077 TTACCTCATTTGGAACAATTTTAATTTTGGGCCTTTCGAGGCCCATTAGATTCGTTTTGAATCGA
          1 TTAACTCTTTTGGAACAATTGTAATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGA

                                                        *                    
       1142 CTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGACCTAACTATAATCATTTTGG
         66 CTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGG

                                   
       1207 TGAGATATGTCCACTGTGAAGTT
        131 TGAGATATGTCCACTGTGAAGTT


Statistics
Matches: 1001,  Mismatches: 67, Indels: 14
        0.93            0.06        0.01

Matches are distributed among these distances:
 151   80  0.08
 152   55  0.05
 153   75  0.07
 154  640  0.64
 155  151  0.15

ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40


Consensus pattern (154 bp):   
TTAACTCTTTTGGAACAATTGTAATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGA
CTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGG
TGAGATATGTCCACTGTGAAGTTT

Done.