Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011639.1 Corchorus olitorius cultivar O-4 contig11672, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1808
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26


Found at i:1808 original size:154 final size:154

Alignment explanation


    Indices: 638--1805  Score: 1715
    Period size: 154  Copynumber: 7.6  Consensus size: 154

        628 ATTCGTATCA

                             * *  *    *               *               *     
        638 GAACTAATGGGCCCCGAAAAGCCCAAACTAACAAGTGTTCCAATTGAGCTAAAAACTTCCCAGTG
          1 GAACTAATGGGCCCCGATAGGCACAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG

                            *               *                        *       
        703 GACTAATCTCACCAAAGTGATTATAGTTAGGCAATAAACAATGGAAAG-AAAGCCATCGAAGG-T
         66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG-CATTG-AGGTT

              *                       
        766 TGTCAAATCGAAGACGATTCAAAACG
        129 TGCCAAATCGAAGACGATTCAAAACG

            **        *    *   *  *                                        * 
        792 TCACTAATGGTCCCCAATAAGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGAG
          1 GAACTAATGGGCCCCGATAGGCACAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG

            *            *                                  *                
        857 AACTAATCTCACCTAAATGATTATAGTTAGGCCATAAACAATGGAAAGTAAAGCATTGAGGTTTG
         66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTG

                         *         *
        922 CCAAATCGAAGACAATTCAAAACT
        131 CCAAATCGAAGACGATTCAAAACG

                         * *                                                 
        946 GAACTAATGGGCCTCTATAGGCACAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
          1 GAACTAATGGGCCCCGATAGGCACAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG

                        *                                                 *  
       1011 GACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTG-GGAATT
         66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGG-TTT

                                     
       1075 GCCAAATCGAAGACGATTCAAAACG
        130 GCCAAATCGAAGACGATTCAAAACG

            *                *    *                    *                     
       1100 AAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAATTGAGCTAAAAACTTCACAGTG
          1 GAACTAATGGGCCCCGATAGGCACAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG

               *       *                                                     
       1165 GACAAATCTCAACAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTG
         66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTG

                         *          
       1230 CCAAATCGAAGACAATTCAAAACG
        131 CCAAATCGAAGACGATTCAAAACG

               *         *                              *                   *
       1254 GAATTAATGGGCCTCGATAGGCACAAAATAACAAGTGTTCCAAACGAGCTAAAAACTTCACAGTC
          1 GAACTAATGGGCCCCGATAGGCACAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG

            *     *                                                       *  
       1319 CACTAAACTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTG-GGAATT
         66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGG-TTT

                                     
       1383 GCCAAATCGAAGACGATTCAAAACG
        130 GCCAAATCGAAGACGATTCAAAACG

                             *                          *               *    
       1408 GAACTAATGGGCCCCGAAAGG-ACCAAAATAACAAGTGTTCCAATTGAGCTAAAAACTTCCCAGT
          1 GAACTAATGGGCCCCGATAGGCA-CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT

                                                                *    *       
       1472 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAGGCATCGAAGG-T
         65 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTG-AGGTT

                                      
       1536 TGCCAAATCGAAGACGATTCAAAACG
        129 TGCCAAATCGAAGACGATTCAAAACG

            **        *           *          *                               
       1562 TCACTAATGGTCCCCGATAGGCCCAAAATATA-GAGTGTTCCAAATGAGACTAAAAACTTCACAG
          1 GAACTAATGGGCCCCGATAGGCACAAAATA-ACAAGTGTTCCAAATGAG-CTAAAAACTTCACAG

                                                     *                       
       1626 TGGACTAATCTCACC-AAATGATTATA-TTCAGGCCATAAAGAATGGAAAGAAAAGCATTGAGGT
         64 TGGACTAATCTCACCAAAATGATTATAGTT-AGGCCATAAACAATGGAAAGAAAAGCATTGAGGT

                            *          
       1689 TTGCCAAATCGAAGACAATTCAAAACG
        128 TTGCCAAATCGAAGACGATTCAAAACG

                                           *                                 
       1716 GAACTAATGGGCCCCGATAGGCACAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
          1 GAACTAATGGGCCCCGATAGGCACAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG

                                     
       1781 GACTAATCTCACCAAAATGATTATA
         66 GACTAATCTCACCAAAATGATTATA

       1806 TTC


Statistics
Matches: 914,  Mismatches: 85, Indels: 30
        0.89            0.08        0.03

Matches are distributed among these distances:
 153   44  0.05
 154  832  0.91
 155   36  0.04
 156    2  0.00

ACGTcount: A:0.42, C:0.20, G:0.18, T:0.21


Consensus pattern (154 bp):   
GAACTAATGGGCCCCGATAGGCACAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTG
CCAAATCGAAGACGATTCAAAACG
Done.