Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011640.1 Corchorus olitorius cultivar O-4 contig11673, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5197
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27


Found at i:1067 original size:22 final size:22

Alignment explanation


    Indices: 1039--1083  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1029 GAACTGTCTG

                                  
       1039 AAAGAGCTGAACCTATAGGCAA
          1 AAAGAGCTGAACCTATAGGCAA

                                  
       1061 AAAGAGCTGAACCTATAGGCAA
          1 AAAGAGCTGAACCTATAGGCAA

             
       1083 A
          1 A

       1084 GTTGCATAGC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.47, C:0.18, G:0.22, T:0.13


Consensus pattern (22 bp):   
AAAGAGCTGAACCTATAGGCAA
Done.