Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011652.1 Corchorus olitorius cultivar O-4 contig11685, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4222
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27


Found at i:3202 original size:24 final size:24

Alignment explanation


    Indices: 3175--3224  Score: 100
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       3165 GGGAATAACC

                                    
       3175 GGTGTTAGCAAGAAGGCGCTTTCA
          1 GGTGTTAGCAAGAAGGCGCTTTCA

                                    
       3199 GGTGTTAGCAAGAAGGCGCTTTCA
          1 GGTGTTAGCAAGAAGGCGCTTTCA

              
       3223 GG
          1 GG

       3225 CCCTTCGACG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24


Consensus pattern (24 bp):   
GGTGTTAGCAAGAAGGCGCTTTCA
Done.