Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001166.1 Corchorus olitorius cultivar O-4 contig01166, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 697

Length: 1162
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44


Found at i:199 original size:13 final size:13

Alignment explanation


    Indices: 181--205  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        171 TTGGAATTCC

                         
        181 AAATAATATTTAT
          1 AAATAATATTTAT

                        
        194 AAATAATATTTA
          1 AAATAATATTTA

        206 GAACATTGAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44


Consensus pattern (13 bp):   
AAATAATATTTAT

Found at i:1017 original size:18 final size:19

Alignment explanation


    Indices: 980--1017  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        970 AATCTATTAG

                          **   
        980 TAACCTTATAATTTTTTAA
          1 TAACCTTATAATTTAGTAA

                               
        999 TAACCTTAT-ATTTAGTAA
          1 TAACCTTATAATTTAGTAA

             
       1017 T
          1 T

       1018 TGTATCAAAT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  18    8  0.47
  19    9  0.53

ACGTcount: A:0.37, C:0.11, G:0.03, T:0.50


Consensus pattern (19 bp):   
TAACCTTATAATTTAGTAA
Done.