Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011669.1 Corchorus olitorius cultivar O-4 contig11702, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1110
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34


Found at i:299 original size:154 final size:154

Alignment explanation


    Indices: 1--562  Score: 950
    Period size: 154  Copynumber: 3.7  Consensus size: 154

                                                                             
          1 CCATTAGTTCCGTTTTGGAATCGTCTTCGATTTGGCAAA-CT-AATGCTTTTCTTTCCATTGTTT
          1 CCATTAGTTCCGTTTT-GAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTT

                                                                             
         64 ATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTCGGAACA
         65 ATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTCGGAACA

                                     
        129 CTTGTTATTTTGGGCCTATCGGGGC
        130 CTTGTTATTTTGGGCCTATCGGGGC

                                                                             
        154 CCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTA
          1 CCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTA

                                                       *             *       
        219 TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAACTTTTTAGCTCATTTGGAACAC
         66 TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTCGGAACAC

                      *             
        284 TTGTTATTTTAGGCCTATCGGGGC
        131 TTGTTATTTTGGGCCTATCGGGGC

            *    *    *                                                      
        308 TCATTTGTTCTGTTTTGAATCGTCTTCGATTTGG-AGAACCTCAATGCTTTTCTTTCCATTGTTT
          1 CCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCA-AACCTCAATGCTTTTCTTTCCATTGTTT

                                                                             
        372 ATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTCGGAACA
         65 ATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTCGGAACA

                                *    
        437 CTTGTTATTTTGGGCCTATCTGGGC
        130 CTTGTTATTTTGGGCCTATCGGGGC

            *     *    *    *                          *   *                 
        462 TCATTAATTCCATTTTAAATCGTCTTCGATTTGGCAAACCTCATTGCCTTTCTTTCCATTGTTTA
          1 CCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTA

              *                          *      
        527 TGACCTAACTATAATCATTTTGGTGAGATCAGTCCA
         66 TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA

        563 TGATACGAAT


Statistics
Matches: 386,  Mismatches: 19, Indels: 7
        0.94            0.05        0.02

Matches are distributed among these distances:
 152   22  0.06
 153   19  0.05
 154  344  0.89
 155    1  0.00

ACGTcount: A:0.21, C:0.20, G:0.18, T:0.41


Consensus pattern (154 bp):   
CCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTA
TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTCGGAACAC
TTGTTATTTTGGGCCTATCGGGGC
Done.