Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001168.1 Corchorus olitorius cultivar O-4 contig01168, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1067
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:94 original size:60 final size:60

Alignment explanation


    Indices: 1--128  Score: 193
    Period size: 60  Copynumber: 2.1  Consensus size: 60

                   *                **             *           *  *     
          1 CTTATTTAGCCAAATTAAAAGATCGGACCCTTATTTGAGTATTTTGGCAAATGTTAGGCC
          1 CTTATTTGGCCAAATTAAAAGATCAAACCCTTATTTGAGCATTTTGGCAAACGTAAGGCC

                                   *                                    
         61 CTTATTTGGCCAAATTAAAAGATTAAACCCTTATTTGAGCATTTTGGCAAACGTAAGGCC
          1 CTTATTTGGCCAAATTAAAAGATCAAACCCTTATTTGAGCATTTTGGCAAACGTAAGGCC

                    
        121 CTTATTTG
          1 CTTATTTG

        129 AGCAATTAGC


Statistics
Matches: 61,  Mismatches: 7, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  60   61  1.00

ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35


Consensus pattern (60 bp):   
CTTATTTGGCCAAATTAAAAGATCAAACCCTTATTTGAGCATTTTGGCAAACGTAAGGCC
Done.