Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011680.1 Corchorus olitorius cultivar O-4 contig11713, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1143
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23


Found at i:286 original size:154 final size:154

Alignment explanation


    Indices: 7--1136  Score: 1782
    Period size: 154  Copynumber: 7.4  Consensus size: 154

          1 GTTTGT

                           *        *              *                   *     
          7 CCATAAACAATGGAATGAAAAGCTATGAGGTTTGCCAAAACGAAGTCGATTCAAAACGGTTCTAA
          1 CCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAA

                   *                                          *          *   
         72 TGGGCCCTGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTCCACAGTGGA-GTAA
         66 TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACAT-A

                                  * *
        136 TCTCACCAAAATGATTATAGTTTGT
        130 TCTCACCAAAATGATTATAGTTAGG

                                               *                      *      
        161 CCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCTAAATCGAAGTCGATTCAAAACGTATCTAA
          1 CCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAA

                                                                 * *    * *  
        226 TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAGAATGGAGAAAT
         66 TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATAT

                                 *  
        291 CTCACCAAAATGATTATAGTTTGG
        131 CTCACCAAAATGATTATAGTTAGG

                          *                  *          *  *            *    
        315 CCATAAACAATGGATAGAAAAGCTTTGAGGTTTTCCAAATCGAAATCTATTCAAAACGGAACTAA
          1 CCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAA

                   *                                        *                
        380 TGGGCCCGGAAAGGCCCAAAAT-ACAAGTGTTCCAAATGAGCTAAAAATTTCACAGTGGACATAT
         66 TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATAT

               *                    
        444 CTCTCCAAAATGATTATAGTTAGG
        131 CTCACCAAAATGATTATAGTTAGG

                                      *                                      
        468 CCATAAACAATGGAAAGAAAAGCTTTTAGGTTT-CCAAATCGAAGTCGATTCAAAACGGATCTAA
          1 CCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAA

                                                                             
        532 TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATAT
         66 TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATAT

                                   *
        597 CTCACCAAAATGATTATAGTTAGT
        131 CTCACCAAAATGATTATAGTTAGG

            *                              *                                 
        621 TCATAAACAATGGAAAGAAAAGCTTTGAGGTATGCCAAATCGAAGTCGATTCAAAACGGATCTAA
          1 CCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAA

                                  *    * *                                   
        686 TGGGCCCCGAAAGGCCCAAAATTACAATTCTTCCAAATGAGCTAAAAACTTCACAGTGGACATAT
         66 TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATAT

               * *                  
        751 CTCTCAAAAATGATTATAGTTAGG
        131 CTCACCAAAATGATTATAGTTAGG

                          *       *                        *            *    
        775 CCATAAACAATGGATAGAAAAGATTTGAGGTTTGCCAAATCGAAGTCTATTCAAAACGGAACTAA
          1 CCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAA

                                                                 *        *  
        840 TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAGAGTGGACAAAT
         66 TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATAT

                 *                  
        905 CTCACTAAAATGATTATAGTTAGG
        131 CTCACCAAAATGATTATAGTTAGG

                          *       *                                          
        929 CCATAAACAATGGATAGAAAAGTTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAA
          1 CCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAA

                         * *                                *                
        994 TGGGCCCCGAAAGTCACAAAATAACAAGTGTTCCAAATGAGCTAAAAATTTCACAGTGGACATAT
         66 TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATAT

               *                    
       1059 CTCTCCAAAATGATTATAGTTAGG
        131 CTCACCAAAATGATTATAGTTAGG

                                      *                 *  *       
       1083 CCATAAACAATGGAAAGAAAAGCTTTTAGGTTT-CCAAATCGAAATCTATTCAAA
          1 CCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAA

       1137 GCGAAAC


Statistics
Matches: 899,  Mismatches: 74, Indels: 7
        0.92            0.08        0.01

Matches are distributed among these distances:
 152   49  0.05
 153  202  0.22
 154  648  0.72

ACGTcount: A:0.40, C:0.18, G:0.18, T:0.23


Consensus pattern (154 bp):   
CCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAACGGATCTAA
TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACATAT
CTCACCAAAATGATTATAGTTAGG

Done.