Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011690.1 Corchorus olitorius cultivar O-4 contig11723, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3490
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:1330 original size:21 final size:21

Alignment explanation


    Indices: 1306--1355  Score: 73
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       1296 CTTAGGCAAT

                                 
       1306 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGAAACCTTC

                    **   *       
       1327 TCCAATGATTTTGGAACCTTC
          1 TCCAATGAGCTTGAAACCTTC

                    
       1348 TCCAATGA
          1 TCCAATGA

       1356 ACTTCTAGCA


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32


Consensus pattern (21 bp):   
TCCAATGAGCTTGAAACCTTC
Done.