Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011697.1 Corchorus olitorius cultivar O-4 contig11730, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 649

Length: 1082
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21


Found at i:823 original size:153 final size:153

Alignment explanation


    Indices: 1--1082  Score: 1696
    Period size: 154  Copynumber: 7.0  Consensus size: 153

                                               *                   *         
          1 ACTAATCTCACCAAAATGATTATAGTTAGGCCATACACAATGGAAAGAAAAGCATTG-AGGTTTG
          1 ACTAATCTCACC-AAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAAGGTTT-

                                   *                       *             *   
         65 CCAAATCGAAGACGATTCAAAACATCACTAATGGTCCCCGATAGGCCCAAAATAACAAGTGGTCC
         64 CCAAATCGAAGACGATTCAAAACGTCACTAATGGTCCCCGATAGGCCGAAAATAACAAGTGTTCC

                                     
        130 AAATGAGCTAAAAACTTCACAGTGG
        129 AAATGAGCTAAAAACTTCACAGTGG

               *                                                     *       
        155 ACTCATCTCACCAAATGATTATAGTTAGGACCATAAACAATAGGAAAGAAAAGCATCCAAGGTTT
          1 ACTAATCTCACCAAATGATTATAGTTAGG-CCATAAACAAT-GGAAAGAAAAGCATCGAAGGTTT

                                    **                                       
        220 CCAAATCGAAGACGATTCAAAACGAAACTAATGGGT-CCCGATAGAG-C-AAAATAACAAGTGTT
         64 CCAAATCGAAGACGATTCAAAACGTCACTAAT-GGTCCCCGATAG-GCCGAAAATAACAAGTGTT

                                   *   
        282 CCAAATGAGCTAAAAACTTCACAATGG
        127 CCAAATGAGCTAAAAACTTCACAGTGG

                                   * *                        *            * 
        309 ACTAATCTCACCAAAATGATTATGGCTAGGCCATAAACAATGGAAAGAAAGGCATCGAAGGTTGC
          1 ACTAATCTCACC-AAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAAGGTTTC

                                                                             
        374 CAAATCGAAGACGATTCAAAACGTCACTAATGGTCCCCGATAGGCCGAAAATAACAAGTGTTCCA
         65 CAAATCGAAGACGATTCAAAACGTCACTAATGGTCCCCGATAGGCCGAAAATAACAAGTGTTCCA

                               *    
        439 AATGAGCTAAAAACTTCACGGTGG
        130 AATGAGCTAAAAACTTCACAGTGG

                        *                                     *         *    
        463 ACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAGGCATCGAA-TTTTG
          1 ACTAATCTCAC-CAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAAGGTTT-

                                     *                     *                 
        527 CCAAATCGAAGACGATTCAAAACGTTACTAATGGTCCCCGATAGGCCCAAAATAACAAGTGTTCC
         64 CCAAATCGAAGACGATTCAAAACGTCACTAATGGTCCCCGATAGGCCGAAAATAACAAGTGTTCC

                                      
        592 AAATGAGACTAAAAACTTCACAGTGG
        129 AAATGAG-CTAAAAACTTCACAGTGG

                                                                   *         
        618 ACTAATCTCACCAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCCAAGGTTTCC
          1 ACTAATCTCACCAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAAGGTTTCC

                                                              *              
        683 AAATCGAAGACGATTCAAAACGTCACTAATGGTCCCCGATAGGCCGAAAAGAACAAGTGTTCCAA
         66 AAATCGAAGACGATTCAAAACGTCACTAATGGTCCCCGATAGGCCGAAAATAACAAGTGTTCCAA

                           *       
        748 ATGAGCTAAAAACTTTACAGTGG
        131 ATGAGCTAAAAACTTCACAGTGG

                                                                             
        771 ACTAATCTCACCAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAAGGTTTCC
          1 ACTAATCTCACCAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAAGGTTTCC

                                   *                        *                
        836 AAATCGAAGACGATTCAAAACG-AACCTAATAGG-CCCCGATAGAG--AAAAATAACAAGTGTTC
         66 AAATCGAAGACGATTCAAAACGTCA-CTAAT-GGTCCCCGATAG-GCCGAAAATAACAAGTGTTC

                                      
        897 CAAATGAGCTAAAAACTTCACAGTGG
        128 CAAATGAGCTAAAAACTTCACAGTGG

                                           *                  *  *         * 
        923 ACTAATCTCACCAAAATGATTATAGTTAGGCTATAAACAATGGAAAGAAAGGCTTCGAAGGTTGC
          1 ACTAATCTCACC-AAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAAGGTTTC

                                                        *                    
        988 CAAATCGAAGACGATTCAAAACGTCACTAATGGTCCCCGATAGGTCGAAAATAACAAGTGTTCCA
         65 CAAATCGAAGACGATTCAAAACGTCACTAATGGTCCCCGATAGGCCGAAAATAACAAGTGTTCCA

              *                     
       1053 AACGAGCTAAAAACTTCACAGTGG
        130 AATGAGCTAAAAACTTCACAGTGG

                  
       1077 ACTAAT
          1 ACTAAT


Statistics
Matches: 860,  Mismatches: 47, Indels: 42
        0.91            0.05        0.04

Matches are distributed among these distances:
 152   60  0.07
 153  280  0.33
 154  412  0.48
 155   98  0.11
 156   10  0.01

ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21


Consensus pattern (153 bp):   
ACTAATCTCACCAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAAGGTTTCC
AAATCGAAGACGATTCAAAACGTCACTAATGGTCCCCGATAGGCCGAAAATAACAAGTGTTCCAA
ATGAGCTAAAAACTTCACAGTGG
Done.