Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000117.1 Corchorus olitorius cultivar O-4 contig00117, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1075
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32


Found at i:412 original size:43 final size:43

Alignment explanation


    Indices: 330--414  Score: 107
    Period size: 43  Copynumber: 2.0  Consensus size: 43

        320 CCCGCGTCGT

                         *         * ***               
        330 GCACCTGATTATAGTGGGTGAGTTTTTTAACAGGAGCAGCTGG
          1 GCACCTGATTATAATGGGTGAGTCTCCCAACAGGAGCAGCTGG

                                          *   *       
        373 GCACCTGATTATAATGGGTGAGTCTCCCAATAGGGGCAGCTG
          1 GCACCTGATTATAATGGGTGAGTCTCCCAACAGGAGCAGCTG

        415 CGTACGCAAA


Statistics
Matches: 35,  Mismatches: 7, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  43   35  1.00

ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27


Consensus pattern (43 bp):   
GCACCTGATTATAATGGGTGAGTCTCCCAACAGGAGCAGCTGG
Done.