Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011712.1 Corchorus olitorius cultivar O-4 contig11745, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2310
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26


Found at i:257 original size:19 final size:19

Alignment explanation


    Indices: 233--271  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        223 ACAGAAAGAG

                               
        233 TCCCTTTCTAGTTTTAGGT
          1 TCCCTTTCTAGTTTTAGGT

                               
        252 TCCCTTTCTAGTTTTAGGT
          1 TCCCTTTCTAGTTTTAGGT

             
        271 T
          1 T

        272 AGGGGAAGAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.10, C:0.21, G:0.15, T:0.54


Consensus pattern (19 bp):   
TCCCTTTCTAGTTTTAGGT
Done.