Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011719.1 Corchorus olitorius cultivar O-4 contig11752, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3173
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.21
Found at i:490 original size:154 final size:154
Alignment explanation
Indices: 2--3170 Score: 4676
Period size: 154 Copynumber: 20.6 Consensus size: 154
1 T
2 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* * *
67 AGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
* * *
132 A-ACTAATGGGCTCCGAAAGGCCT
131 ACACTAATGGGCCCCGATAGGCCC
*
155 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCACACCAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* *
220 AGTTAGGCCATAAACAATGG-AAGAAAA-CATTGAGGTTTACCAAATCGAAGACGATTTAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
* ** *
283 TCACTAATGGGCCTTGATAGGCAC
131 ACACTAATGGGCCCCGATAGGCCC
* *
307 AAAATAACAAGTGTTCCAAATGAGCTAAAAACATCACAGTGGACTAATCTCACCAAAATGACTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* *
372 AGGTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAGAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
* *
437 ACAGTAATGAGCCCCGATAGGCCC
131 ACACTAATGGGCCCCGATAGGCCC
* * *
461 AAAATAACAATTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACGAAAATGATAAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
*
526 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCTCAAATCGAAGACGATTCAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
591 ACACTAATGGGCCCCGATAGGCCC
131 ACACTAATGGGCCCCGATAGGCCC
*
615 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATGGACTAATCTCACCAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* * * * * * *
680 AGTTAGGCCATAAAAAATGGAAACAAAAGCATCGAGGGTTGCCAAATCGAATACGATTCCAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAAC-
* * *
745 GA-ACTAAT-GGCCCCAAAAGGCCT
130 GACACTAATGGGCCCCGATAGGCCC
*
768 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTTT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* * *
833 AGTTAGGCCATAAAGAATGGAAAGAAAAGCATTGAGG-TTACCAAATCGAAGACGATTCATAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
*
897 ACACTAATGGGCCCCGATAGGCAC
131 ACACTAATGGGCCCCGATAGGCCC
* * *
921 AAAATAACAAGTGTTCCAAATGACCTAAAAACTTCACAGTGGACTAATCTCACGAAAATTATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* *
986 AGTTAGGCCATAAACAATGGAAAGAATAGCATTGAGGTTTCCCAAATCGAAGACGATTCAGAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
1051 ACACTAATGGGCCCCGATAGGCCC
131 ACACTAATGGGCCCCGATAGGCCC
***
1075 -AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAAAAGACTAATCTCACCAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* **
1139 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCTCAAATTAAAGACGATTCAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
* *
1204 ACACTAATGGGCCCAGATAGGCGC
131 ACACTAATGGGCCCCGATAGGCCC
* * *
1228 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACGAAAATGATAAG
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* * *
1293 AGTTAGGCCATAAACAATAGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAGAGCG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
1358 ACACTAATGGGCCCCGATAGGCCC
131 ACACTAATGGGCCCCGATAGGCCC
*** *
1382 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAAAAGACTAATCTCACTAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* * *
1447 AGTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTTACCAAATCGAAGACGATTTAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
* ** * *
1512 TCACTAATGGGCCTTGATTGGCAC
131 ACACTAATGGGCCCCGATAGGCCC
*
1536 AAAATAACAAGTGTTCTAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* * * *
1601 AGGTAGGACATAAACAATGGAAAGAAAAGCATTAAGGTTTCGCAAATCGAAGACGATTCAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
1666 ACACTAATGGGCCCCGATAGGCCC
131 ACACTAATGGGCCCCGATAGGCCC
***
1690 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAAAAGACTAATCTCACCAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* * * * * * *
1755 AGTTAGGACATAAAAAATGGAAACAAAAGCATCGAGGGTTGCCAAATCGAATACGATTCAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAAC-
* *
1820 GA-ACTAAT-GGCCCCGAAAGGCCT
130 GACACTAATGGGCCCCGATAGGCCC
*
1843 AAAATAACAAGTGTTGCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* *
1908 AGGTAGGCCATAAACAATGGAAAGAAAAGCATTGAGG-TTACCAAATCGAAGACGATTCAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
*
1972 ACACTAACGGGCCCCGATAGGCCC
131 ACACTAATGGGCCCCGATAGGCCC
* * * *
1996 AAAATAACAAGTGTTGCAAATGAGCTAAAAGCTTCACAATGGATTAATCTCACCAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
** * * * *
2061 AGTTAGGCCATAAACAATAAAAAGAAAAACATTAAGGTTTACCAAATCGAAGACGATTTAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
* ** * *
2126 TCACTAATGGGCCTTGATTGGCAC
131 ACACTAATGGGCCCCGATAGGCCC
* *
2150 AAAGTAACAAGTGTTCTAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* * ** ** *
2215 TGTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTAACCAAATCGAAGATAATTTAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
* * ** *
2280 TCACTGATGGGCCTTGATAGGCAC
131 ACACTAATGGGCCCCGATAGGCCC
* * * *
2304 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTTACAGTTGACTAATCTCACTAAAATGATTAG
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* * * * * * *
2369 AGTTAGGCCATAAACAATGCAAAGAAAAGCATCGTGGGTTGCCAAATCGAAGAAGAATCAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAAC-
* *
2434 GA-ACTAATGGGCCCCGAAAGGCCT
130 GACACTAATGGGCCCCGATAGGCCC
* *
2458 AAAATAACAAGTGTTCCAAATGACCTAAAAACTTCACAGTGGACTAATCTCACAAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* * * *
2523 AGGTAGGCCATAAACAAAGCAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAGAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
2588 ACACTAATGGGCCCCGATAGGCCC
131 ACACTAATGGGCCCCGATAGGCCC
* * * *
2612 AAAATAACAATTGTTCCAAATGAGCTAAAAACTTCACTGTGGACTAATCTCACGAAAATGATAAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* *
2677 AGTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTTCTCAAATCGAAGACGATTTCAAAAC
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGA-TTCAAAAC
*
2742 GACACTAATGGGCCCCGATAGGCAC
130 GACACTAATGGGCCCCGATAGGCCC
2767 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* * * *
2832 AGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAATACGATTCAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAAC-
* *
2897 GA-ACTAAT-GGCCCCGAAAGGCCT
130 GACACTAATGGGCCCCGATAGGCCC
* *
2920 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACGAAAAATGATAA
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC-CAAAATGATTA
* * * *
2985 GAGTTAGGCGATAAACAATGGAAAGAAAAGCATTGAGGTTTCTCAAATCAAAGACGATTCAAAAC
65 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAAC
*
3050 GACACTAAGGGGCCCCGATAGGCCC
130 GACACTAATGGGCCCCGATAGGCCC
* *
3075 AAAA-ATACAAGTGTTCCAAATGAGCTAAAAACTTCACA-TAAGACTATTCTCACCAAAATGATT
1 AAAATA-ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT-GGACTAATCTCACCAAAATGA-T
** *
3138 TATAGTTAACCCATAAACAATGGAAACAAAAGC
63 TATAGTTAGGCCATAAACAATGGAAAGAAAAGC
3171 TTC
Statistics
Matches: 2714, Mismatches: 280, Indels: 42
0.89 0.09 0.01
Matches are distributed among these distances:
151 36 0.01
152 161 0.06
153 729 0.27
154 1551 0.57
155 237 0.09
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.21
Consensus pattern (154 bp):
AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
AGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACG
ACACTAATGGGCCCCGATAGGCCC
Found at i:2223 original size:922 final size:920
Alignment explanation
Indices: 2--3170 Score: 4743
Period size: 922 Copynumber: 3.4 Consensus size: 920
1 T
2 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
67 AGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACG
* * *
132 AACTAATGGGCTCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
131 AACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATGG
*
197 ACTAATCACACCAAAATGATTATAGTTAGGCCATAAACAATGG-AAG-AAAACATTGAGGTTTAC
196 ACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTT-C
* * * *
260 -CAAATCGAAGACGATTTAAAACGTCACTAATGGGCCTTGATAGGCACAAAATAACAAGTGTTCC
260 TCAAATCAAAGACGATTCAAAACGACACTAATGGGCCCTGATAGGCACAAAATAACAAGTGTTCC
* * *
324 AAATGAGCTAAAAACATCACAGTGGACTAATCTCACCAAAATGACTATAGGTAGGCCATAAACAA
325 AAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAA
* *
389 TGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAGAACGACAGTAATGAGCCCCGA
390 TGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAGAACGACACTAATGGGCCCCGA
* * *
454 TAGGCCCAAAATAACAATTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACGAAAA
455 TAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTAGACTAATCTCACTAAAA
*
519 TGATAATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCTCAAATCGAAGACGATT
520 TGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTC-CAAATCGAAGACGATT
584 CAAAACGACACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTT
584 CAAAACGACACTAATGGGCCCCGATAGG-CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTT
* * * * *
649 CACAATGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAAAAATGGAAACAAAAGCATCG
648 CACAGTGGACTAATCTCACCAAAATGATTATAGGTAGGCCATAAACAATGGAAAGAAAAGCATTG
* * * * * *
714 AGGGTT-GCCAAATCGAATACGATTCCAAACGGA-ACTAAT-GGCCCCAAAAGGCCTAAAATAAC
713 AGGTTTCG-CAAATCGAAGACGATTCAAAAC-GACACTAATGGGCCCCGATAGGCCCAAAATAAC
*
776 AAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTTTAGTTAGGC
776 AAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC
* *
841 CATAAAGAATGGAAAGAAAAGCATTGAGGTTACCAAATCGAAGACGATTCATAACGACACTAATG
841 CATAAAAAATGGAAAGAAAAGCATTGAGGTTACCAAATCGAAGACGATTCAAAACGACACTAATG
906 GGCCCCGATAGGCAC
906 GGCCCCGATAGGCAC
* * *
921 AAAATAACAAGTGTTCCAAATGACCTAAAAACTTCACAGTGGACTAATCTCACGAAAATTATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
* * * * *
986 AGTTAGGCCATAAACAATGGAAAGAATAGCATTGAGGTTTCCCAAATCGAAGACGATTCAGAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACG
* **
1051 ACACTAATGGGCCCCGATAGGCCC-AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAAAA
131 A-ACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATG
*
1115 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTC
195 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTTC
* * *
1180 TCAAATTAAAGACGATTCAAAACGACACTAATGGGCCCAGATAGGCGCAAAATAACAAGTGTTCC
260 TCAAATCAAAGACGATTCAAAACGACACTAATGGGCCCTGATAGGCACAAAATAACAAGTGTTCC
* * *
1245 AAATGAGCTAAAAACTTCACAGTGGACTAATCTCACGAAAATGATAAGAGTTAGGCCATAAACAA
325 AAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAA
* *
1310 TAGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAGAGCGACACTAATGGGCCCCGA
390 TGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAGAACGACACTAATGGGCCCCGA
**
1375 TAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAAAAGACTAATCTCACTAAAA
455 TAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTAGACTAATCTCACTAAAA
*
1440 TGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTTACCAAATCGAAGACGATT
520 TGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT-CCAAATCGAAGACGATT
* * ** * *
1505 TAAAACGTCACTAATGGGCCTTGATTGGCACAAAATAACAAGTGTTCTAAATGAGCTAAAAACTT
584 CAAAACGACACTAATGGGCCCCGATAGGC-CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTT
* *
1570 CACAGTGGACTAATCTCACCAAAATGATTATAGGTAGGACATAAACAATGGAAAGAAAAGCATTA
648 CACAGTGGACTAATCTCACCAAAATGATTATAGGTAGGCCATAAACAATGGAAAGAAAAGCATTG
1635 AGGTTTCGCAAATCGAAGACGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAATAACAA
713 AGGTTTCGCAAATCGAAGACGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAATAACAA
*** *
1700 GTGTTCCAAATGAGCTAAAAACTTCACAAAAGACTAATCTCACCAAAATGATTATAGTTAGGACA
778 GTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCA
* * * *
1765 TAAAAAATGGAAACAAAAGCATCGAGGGTTGCCAAATCGAATACGATTCAAAACGGA-ACTAAT-
843 TAAAAAATGGAAAGAAAAGCATTGA-GGTTACCAAATCGAAGACGATTCAAAAC-GACACTAATG
*
1828 GGCCCCGAAAGGC-C
906 GGCCCCGATAGGCAC
*
1842 TAAAATAACAAGTGTTGCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
1 -AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
* * *
1907 TAGGTAGGCCATAAACAATGGAAAGAAAAGCATTGA-GGTTACCAAATCGAAGACGATTCAAAAC
65 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAAC
* * * *
1971 GACACTAACGGGCCCCGATAGGCCCAAAATAACAAGTGTTGCAAATGAGCTAAAAGCTTCACAAT
130 GA-ACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAAT
* ** *
2036 GGATTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAAAAAGAAAAACATTAAGGTTT
194 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTT
* * * * * *
2101 AC-CAAATCGAAGACGATTTAAAACGTCACTAATGGGCCTTGATTGGCACAAAGTAACAAGTGTT
259 -CTCAAATCAAAGACGATTCAAAACGACACTAATGGGCCCTGATAGGCACAAAATAACAAGTGTT
* *
2165 CTAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATTGTTAGGCCATAAAC
323 CCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAAC
* ** ** * * * * **
2230 AATGGAAAGAAAAACATTGAGGTTAACCAAATCGAAGATAATTTAAAACGTCACTGATGGGCCTT
388 AATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAGAACGACACTAATGGGCCCC
* * *
2295 GATAGGCACAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTTACAGTTGACTAATCTCACTAA
453 GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTAGACTAATCTCACTAA
* * * *
2360 AATGATTAGAGTTAGGCCATAAACAATGCAAAGAAAAGCATCGTG-GGTTGCCAAATCGAAGAAG
518 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT--TGAGGTTTCCAAATCGAAGACG
* * *
2424 AATCAAAACGGA-ACTAATGGGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGACCTAAAA
581 ATTCAAAAC-GACACTAATGGGCCCCGATAGGCC-AAAATAACAAGTGTTCCAAATGAGCTAAAA
* * *
2488 ACTTCACAGTGGACTAATCTCACAAAAATGATTATAGGTAGGCCATAAACAAAGCAAAGAAAAGC
644 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGGTAGGCCATAAACAATGGAAAGAAAAGC
* *
2553 ATTGAGGTTTCCCAAATCGAAGACGATTCAGAACGACACTAATGGGCCCCGATAGGCCCAAAATA
709 ATTGAGGTTTCGCAAATCGAAGACGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAATA
* * * *
2618 ACAATTGTTCCAAATGAGCTAAAAACTTCACTGTGGACTAATCTCACGAAAATGATAATAGTTAG
774 ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAG
* * *
2683 GCCATAAACAATGGAAAGAAAAACATTGAGGTTTCTCAAATCGAAGACGATTTCAAAACGACACT
839 GCCATAAAAAATGGAAAGAAAAGCATTGAGGTTAC-CAAATCGAAGACGA-TTCAAAACGACACT
2748 AATGGGCCCCGATAGGCAC
902 AATGGGCCCCGATAGGCAC
2767 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
*
2832 AGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAATACGATTCAAAACG
66 AGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAAC-
* *
2897 GAACTAAT-GGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
130 GAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATG
* * * * *
2961 GACTAATCTCACGAAAAATGATAAGAGTTAGGCGATAAACAATGGAAAGAAAAGCATTGAGGTTT
195 GACTAATCTCAC-CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTT
* * *
3026 CTCAAATCAAAGACGATTCAAAACGACACTAAGGGGCCCCGATAGGCCCAAAA-ATACAAGTGTT
259 CTCAAATCAAAGACGATTCAAAACGACACTAATGGGCCCTGATAGGCACAAAATA-ACAAGTGTT
* * **
3090 CCAAATGAGCTAAAAACTTCACA-TAAGACTATTCTCACCAAAATGATTTATAGTTAACCCATAA
323 CCAAATGAGCTAAAAACTTCACAGT-GGACTAATCTCACCAAAATGA-TTATAGTTAGGCCATAA
*
3154 ACAATGGAAACAAAAGC
386 ACAATGGAAAGAAAAGC
3171 TTC
Statistics
Matches: 2025, Mismatches: 195, Indels: 53
0.89 0.09 0.02
Matches are distributed among these distances:
919 203 0.10
920 26 0.01
921 514 0.25
922 854 0.42
923 51 0.03
924 178 0.09
925 168 0.08
926 31 0.02
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.21
Consensus pattern (920 bp):
AAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT
AGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACG
AACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATGG
ACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTTCT
CAAATCAAAGACGATTCAAAACGACACTAATGGGCCCTGATAGGCACAAAATAACAAGTGTTCCA
AATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAAT
GGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAGAACGACACTAATGGGCCCCGAT
AGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTAGACTAATCTCACTAAAAT
GATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCAAATCGAAGACGATTCA
AAACGACACTAATGGGCCCCGATAGGCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
AGTGGACTAATCTCACCAAAATGATTATAGGTAGGCCATAAACAATGGAAAGAAAAGCATTGAGG
TTTCGCAAATCGAAGACGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
AAAATGGAAAGAAAAGCATTGAGGTTACCAAATCGAAGACGATTCAAAACGACACTAATGGGCCC
CGATAGGCAC
Done.