Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011720.1 Corchorus olitorius cultivar O-4 contig11753, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3773
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Found at i:407 original size:154 final size:154
Alignment explanation
Indices: 1--3770 Score: 5430
Period size: 154 Copynumber: 24.7 Consensus size: 154
**
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTACTCCAAATGAGCTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
*
131 CAAAATCGAAGACGATTCAAAACG
131 CCAAATCGAAGACGATTCAAAACG
** * * *
155 TCACTAATGGG----GATTGGCCCACAATAACAAGTGTTCCAATTGAGCTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* * *
216 GACTAATCTCACAAAAATGATTATAGTTAGGCCATAAACAATCGAAAGAAAAGCAATGAGGGTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
281 CCAAATCGAAGACGATTCAAAACG
131 CCAAATCGAAGACGATTCAAAACG
**
305 TCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
370 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
435 CCAAATCGAAGACGATTCAAAACG
131 CCAAATCGAAGACGATTCAAAACG
*
459 GAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* * * * *
524 GACAAATCTCACCAAAATGATTAGAGTTAGGCCATAAACAATGGATAGAAAAGCTTTGAGGTTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
*
589 CCAAATCGAAGTCGATT-------
131 CCAAATCGAAGACGATTCAAAACG
* * * * *
606 ---CTAATGGTCCCCAAAAGGCCCAAAATAACAAGTGTTCCAATTGAGCTAAAAATTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
** * * * * **
668 GAC-ATATCTCTTCAAAAAGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACTTTCAGATTT
66 GACTA-ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
* *
732 GCCAAATCGAAGTCTATTCAAAACG
130 GCCAAATCGAAGACGATTCAAAACG
* * *
757 GAACTAATGCGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAATTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* ** * * *
822 GAC-ATATCTCTCCAAAATGATTATAGTTAGGCCATAAACAATGGAGTGAAAAGCTTTTAGGTTT
66 GACTA-ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
* *
886 TCCAAATCGAA-ATCTATTCAAAACG
130 GCCAAATCGAAGA-CGATTCAAAACG
* *
911 GAATTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAAACTTCACAGT
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCT-AAAAACTTCACAGT
* * *
976 GGAC-ATATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCTTTGAGGTT
65 GGACTA-ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGT
*
1040 TGCCAAATCGAAGTCGATTCAAAACG
129 TGCCAAATCGAAGACGATTCAAAACG
* * * * *
1066 GATCTAATGGGCCCCGAAAGGCCTAAAATAACAAGTATTCCAAATTG-GCTAAAAACTTCAGAGT
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAA-TGAGCTAAAAACTTCACAGT
* * * * * *
1130 GGAC-ATATCTCACGAAAATGATTATAGTTAAGTCATAAACAATGGATAGAAAAGCTTTGAGGTT
65 GGACTA-ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGT
* *
1194 TGCCAAATCAAAGTCGATTCAAAACG
129 TGCCAAATCGAAGACGATTCAAAACG
* * * *
1220 GTACTAATGGGCCCCGAAAGGCCC-TAATAACAAGTGTTCCAAATGAGCTAAAAATTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* * * * *
1284 GAC-ATATCTCTCCAAAATGATTATAGTTAGGCCATAAACAATGGAATGAAAAGCTTTTAGGTTT
66 GACTA-ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
* * *
1348 TCCAAAACGAA-ATCTATTCAAAACG
130 GCCAAATCGAAGA-CGATTCAAAACG
* *
1373 GAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGGGTTCCAAATGAGCTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* * ** * *
1438 GA-AATATCTCACCAAAATTATTATAGTTAGTTCATAAACAATGGAAAGAAAAGCTTTGAGGTTT
66 GACTA-ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
*
1502 GCCAAATCGAAGTCGATTCAAAACG
130 GCCAAATCGAAGACGATTCAAAACG
* * **
1527 GAACTAATAGGCCCCGAAAGGCCCAAAATAACAAGTACTCCAAATGAGCTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
*
1592 GACAAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
*
1657 CAAAATCGAAGACGATTCAAAACG
131 CCAAATCGAAGACGATTCAAAACG
** * * * *
1681 TTACTAATGGG----GATTGGCCCACAATAACAAGTGTTCCAATTGAGTTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* * *
1742 GACTAATCTCACAAAAATGATTATTGTTAGGCCATAAACAATGGAAAGAAAAGCAATGAGGGTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
1807 CCAAATCGAAGACGATTCAAAACG
131 CCAAATCGAAGACGATTCAAAACG
* *
1831 GAACTAATGGACCCCG--A-G-ACAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
1892 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
1957 CCAAATCGAAGACGATTCAAAACG
131 CCAAATCGAAGACGATTCAAAACG
* * *
1981 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATAAGCAAAAAACTTCAAAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* * * *
2046 GACTAATCTTACCAAAATGATTATAGTTAGGTCATAAACATTGGAAAGAAAAGCATTAAGGGTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
* *
2111 CCAAATCG-AGACTATTCAAAATG
131 CCAAATCGAAGACGATTCAAAACG
2134 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* * * *
2199 GACTAATCTCACCAAATTGATTATAGTTAGGCCATAAAAAATGGAAAGAAATGCATTGAGGATTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
*
2264 CCAAATCGAAGACAATTCAAAACG
131 CCAAATCGAAGACGATTCAAAACG
* * *
2288 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCAAAAAACTTCAAACTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* * *
2353 GACTAATCTTACCAAAATGATTATAGTTAGGTCATAAACATTGGAAAGAAAAGCATTGAGGGTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
* *
2418 CCAAATTGAAGACTATTCAAAACG
131 CCAAATCGAAGACGATTCAAAACG
* **
2442 AAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTACTCCAAATGAGCTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
2507 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
2572 CCAAATCGAAGACGATTCAAAACG
131 CCAAATCGAAGACGATTCAAAACG
** * * *
2596 TCACTAATGGG----GATAGGCCGAAAATAAAAAGTGTTCCAATTGAGCTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
*
2657 GACTAATCTCATCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
*
2722 -CAAATAGAAGACGATTCAAAACG
131 CCAAATCGAAGACGATTCAAAACG
** * * ** *
2745 TCACTAGTGGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAACAAGCTATAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
*
2810 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGGAAAAAAAAGCATTGAGGGTT
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAAT-GGAAAGAAAAGCATTGAGGGTT
*
2875 GCCAAATCGAAGACGATTCAAAACA
130 GCCAAATCGAAGACGATTCAAAACG
** * * *
2900 TCACTAATGGGCTCAGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* * * *
2965 TACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAATAAATGCATTGAGGGTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
3030 CCAAATCGAAGACGATTCAAAACG
131 CCAAATCGAAGACGATTCAAAACG
** *
3054 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTACTCCAAATGAGCTAAAAACTTCATAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
*
3119 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGAAAAGAAAAGCATTGAGGGTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
*
3184 CCAAATGGAAGACGATTCAAAACG
131 CCAAATCGAAGACGATTCAAAACG
** * * *
3208 TCACAAATGGG----GATAGGCCCAAAATAACAAGTGTTCCAATTGAGTTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* * * * *
3269 GACTAATCTCACAAAAATGATTATTGTTAGGCCATAAACAATGGAAGGAAATGCATTGAGGGTTT
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
* *
3334 CCAAATCGAAGACTATTGAAAACG
131 CCAAATCGAAGACGATTCAAAACG
** * * * *
3358 TCACTATTGGGCCCCGATAGGCACAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAATG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
*
3423 GACTAATCTCACCAAAATGATTGTAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
*
3488 CCAAAACGAAGACGATTCAAAACG
131 CCAAATCGAAGACGATTCAAAACG
* * *
3512 GAACTAATGGGCCCCGATAGGCCTAAAAAAACAAGTGTTCCAAATGAGCTAAAAACTTCAAAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* *
3577 GACTAATCTTA-CAGAAATGATTATAGTTAGGCCATAAACATTGGAAAGAAAAGCATTGAGGGTT
66 GACTAATCTCACCA-AAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
*
3641 GCCAAATCGAAGATGATTCAAAACG
130 GCCAAATCGAAGACGATTCAAAACG
* * *
3666 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATAAGCAAAAAACTTCAAAGTG
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* *
3731 GACTAATCTTACCAAAATGATTATAGTTAGGTCATAAACA
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
3771 TTG
Statistics
Matches: 3281, Mismatches: 289, Indels: 92
0.90 0.08 0.03
Matches are distributed among these distances:
143 1 0.00
144 129 0.04
149 32 0.01
150 659 0.20
151 1 0.00
152 3 0.00
153 361 0.11
154 1833 0.56
155 260 0.08
156 2 0.00
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (154 bp):
GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
CCAAATCGAAGACGATTCAAAACG
Found at i:2011 original size:915 final size:919
Alignment explanation
Indices: 1--3770 Score: 5357
Period size: 915 Copynumber: 4.1 Consensus size: 919
**
1 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTACTCCAAATGAGCTAAAAACTTCACAGTG
1 GAACTAATGGGCCCCGA-AGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
66 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
65 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG
* ** * *
131 CAAAATCGAAGACGATTCAAAACGTCACTAATGGG----GATTGGCCCACAATAACAAGTGTTCC
130 CCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCC
*
192 -AATTGAGCTAAAAACTTCACAGTGGACTAATCTCACAAAAATGATTATAGTTAGGCCATAAACA
195 AAATTGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
* * **
256 ATCGAAAGAAAAGCAATGAGGGTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCG
260 ATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCG
321 ATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAA
325 ATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAA
386 ATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGAT
390 ATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGAT
451 TCAAAACGGAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACT
455 TCAAAACGGAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACT
* * *
516 TCACAGTGGACA-AATCTCACCAAAATGATTAGAGTTAGGCCATAAACAATGGATAGAAAAGCTT
520 TCACAGTGGA-ATAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * *
580 TGAGGTTTGCCAAATCGAAGTCGATT---------CTAATGGTCCCCAAAAGGCCCAAAATAACA
584 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGAACTAATGGGCCCCGAAAGGCCCAAAATAACA
** * * * ** *
636 AGTGTTCCAATTGAGCTAAAAATTTCACAGTGGACATATCTCTTCAAAAAGATTATAGTTAGGCC
649 AGTACTCCAAATGAGCTAAAAACTTCACAGTGGACAAATCTCACCAAAATGATTATAGTTAGGCC
* * * ** * * *
701 ATAAACAATGGAAAGAAAAACTTTCAGATTTGCCAAATCGAAGTCTATTCAAAACGGAACTAATG
714 ATAAACAATGGAAAGAAAAGCATTGAGGGTTGCAAAATCGAAGACGATTCAAAACGGAACTAATG
* * *
766 CGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAATTTCACAGTGGAC-ATATC
779 -G---GGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTA-ATC
* * ** * * * *
830 TCTCCAAAATGATTATAGTTAGGCCATAAACAATGGAGTGAAAAGCTTTTAGGTTTTCCAAATCG
839 TCACAAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCG
*
895 AA-ATCTATTCAAAACG
904 AAGA-CGATTCAAAACG
*
911 GAATTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAAACTTCACAGT
1 GAACTAATGGGCCCCG-AAGGCCCAAAATAACAAGTGTTCCAAATGAGCT-AAAAACTTCACAGT
* * *
976 GGAC-ATATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCTTTGAGGTT
64 GGACTA-ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGT
* * * * *
1040 TGCCAAATCGAAGTCGATTCAAAACGGATCTAATGGGCCCCGAAAGGCCTAAAATAACAAGTATT
128 TGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTT
* * * *
1105 CCAAATTG-GCTAAAAACTTCAGAGTGGAC-ATATCTCACGAAAATGATTATAGTTAAGTCATAA
193 CCAAATTGAGCTAAAAACTTCACAGTGGACTA-ATCTCACCAAAATGATTATAGTTAGGCCATAA
* * * * * *
1168 ACAATGGATAGAAAAGCTTTGAGGTTTGCCAAATCAAAGTCGATTCAAAACGGTACTAATGGGCC
257 ACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
* * * *
1233 CCGAAAGGCCC-TAATAACAAGTGTTCCAAATGAGCTAAAAATTTCACAGTGGAC-ATATCTCTC
322 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTA-ATCTCAC
* * * * * *
1296 CAAAATGATTATAGTTAGGCCATAAACAATGGAATGAAAAGCTTTTAGGTTTTCCAAAACGAA-A
386 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGA
* *
1360 TCTATTCAAAACGGAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGGGTTCCAAATGAGCTAA
451 -CGATTCAAAACGGAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
* **
1425 AAACTTCACAGTGGAA-ATATCTCACCAAAATTATTATAGTTAGTTCATAAACAATGGAAAGAAA
515 AAACTTCACAGTGGAATA-ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
* * *
1489 AGCTTTGAGGTTTGCCAAATCGAAGTCGATTCAAAACGGAACTAATAGGCCCCGAAAGGCCCAAA
579 AGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GAACTAATGGGCCCCGAAAGGCCCAAA
1554 ATAACAAGTACTCCAAATGAGCTAAAAACTTCACAGTGGACAAATCTCACCAAAATGATTATAGT
643 ATAACAAGTACTCCAAATGAGCTAAAAACTTCACAGTGGACAAATCTCACCAAAATGATTATAGT
**
1619 TAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCAAAATCGAAGACGATTCAAAACGTTA
708 TAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCAAAATCGAAGACGATTCAAAACGGAA
* * * *
1684 CTAATGGGGATTGGCCCACAATAACAAGTGTTCCAATTGAGTTAAAAACTTCACAGTGGACTAAT
773 CTAATGGGGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAAT
* *
1749 CTCACAAAAATGATTATTGTTAGGCCATAAACAATGGAAAGAAAAGCAATGAGGGTTGCCAAATC
838 CTCACAAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATC
1814 GAAGACGATTCAAAACG
903 GAAGACGATTCAAAACG
* *
1831 GAACTAATGGACCCCG-A-G-ACAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
1 GAACTAATGGGCCCCGAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
1893 ACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGC
66 ACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGC
1958 CAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCA
131 CAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCA
* * * * * *
2023 AA-TAAGCAAAAAACTTCAAAGTGGACTAATCTTACCAAAATGATTATAGTTAGGTCATAAACAT
196 AATTGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAA
* * *
2087 TGGAAAGAAAAGCATTAAGGGTTGCCAAATCG-AGACTATTCAAAATGGAACTAATGGGCCCCGA
261 TGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGA
*
2151 TAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAT
326 TAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAA
* * * *
2216 TGATTATAGTTAGGCCATAAAAAATGGAAAGAAATGCATTGAGGATTGCCAAATCGAAGACAATT
391 TGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATT
* *
2281 CAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCAAAAAACTT
456 CAAAACGGAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTT
* * * * * *
2346 CAAACTGGACTAATCTTACCAAAATGATTATAGTTAGGTCATAAACATTGGAAAGAAAAGCATTG
521 CACAGTGGAATAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTG
* * * *
2411 AGGGTTGCCAAATTGAAGACTATTCAAAACGAAACTAATGGGCCCCGATAGGCCCAAAATAACAA
586 AGGTTTGCCAAATCGAAGACGATTCAAAACG-AACTAATGGGCCCCGAAAGGCCCAAAATAACAA
*
2476 GTACTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCA
650 GTACTCCAAATGAGCTAAAAACTTCACAGTGGACAAATCTCACCAAAATGATTATAGTTAGGCCA
* **
2541 TAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGG
715 TAAACAATGGAAAGAAAAGCATTGAGGGTTGCAAAATCGAAGACGATTCAAAACGGAACTAATGG
* * *
2606 GGATAGGCCGAAAATAAAAAGTGTTCCAATTGAGCTAAAAACTTCACAGTGGACTAATCTCATC-
780 GGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCA-CA
*
2670 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTG-CAAATAGAAGAC
844 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGAC
2734 GATTCAAAACG
909 GATTCAAAACG
** * * ** *
2745 TCACTAGTGGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAACAAGCTATAAACTTCACAGTG
1 GAACTAATGGGCCCCGA-AGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
*
2810 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGGAAAAAAAAGCATTGAGGGTT
65 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAAT-GGAAAGAAAAGCATTGAGGGTT
*** * * *
2875 GCCAAATCGAAGACGATTCAAAACATCACTAATGGGCTCAGATAGGCTCAAAATAACAAGTGTTC
129 GCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTC
*
2940 CAAA-TGAGCTAAAAACTTCACAGTGTACTAATCTCACCAAAATGATTATAGTTAGGCCATAAAC
194 CAAATTGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAAC
* * *
3004 AATAGAAATAAATGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCC
259 AATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCC
** *
3069 GATAGGCCCAAAATAACAAGTACTCCAAATGAGCTAAAAACTTCATAGTGGACTAATCTCACCAA
324 GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAA
* *
3134 AATGATTATAGTTAGGCCATAAACAATGAAAAGAAAAGCATTGAGGGTTGCCAAATGGAAGACGA
389 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGA
** * * * *
3199 TTCAAAACGTCACAAATGGG----GATAGGCCCAAAATAACAAGTGTTCCAATTGAGTTAAAAAC
454 TTCAAAACGGAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
* * * * *
3260 TTCACAGTGGACTAATCTCACAAAAATGATTATTGTTAGGCCATAAACAATGGAAGGAAATGCAT
519 TTCACAGTGGAATAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * * * *
3325 TGAGGGTTT-CCAAATCGAAGACTATTGAAAACGTCACTATTGGGCCCCGATAGGCACAAAATAA
584 TGA-GGTTTGCCAAATCGAAGACGATTCAAAACG-AACTAATGGGCCCCGAAAGGCCCAAAATAA
* ** * * *
3389 AAAGTGTTCCAAATGAGCTAAAAACTTCACAATGGACTAATCTCACCAAAATGATTGTAGTTAGG
647 CAAGTACTCCAAATGAGCTAAAAACTTCACAGTGGACAAATCTCACCAAAATGATTATAGTTAGG
3454 CCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAAA-CGAAGACGATTCAAAACGGAACTA
712 CCATAAACAATGGAAAGAAAAGCATTGAGGGTTG-CAAAATCGAAGACGATTCAAAACGGAACTA
* * *
3518 ATGGGCCCCGATAGGCCTAAAAAAACAAGTGTTCCAAATGAGCTAAAAACTTCAAAGTGGACTAA
776 ATGGG----GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAA
* * *
3583 TCTTACAGAAATGATTATAGTTAGGCCATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAAT
837 TCTCACAAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAAT
*
3648 CGAAGATGATTCAAAACG
902 CGAAGACGATTCAAAACG
* * *
3666 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATAAGCAAAAAACTTCAAAGTG
1 GAACTAATGGGCCCCGA-AGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* *
3731 GACTAATCTTACCAAAATGATTATAGTTAGGTCATAAACA
65 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
3771 TTG
Statistics
Matches: 2570, Mismatches: 243, Indels: 83
0.89 0.08 0.03
Matches are distributed among these distances:
910 46 0.02
911 106 0.04
913 4 0.00
914 324 0.13
915 865 0.34
916 306 0.12
917 10 0.00
918 81 0.03
919 168 0.07
920 402 0.16
921 118 0.05
923 1 0.00
924 139 0.05
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (919 bp):
GAACTAATGGGCCCCGAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
ACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGC
CAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCA
AATTGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAA
TGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGA
TAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAA
TGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATT
CAAAACGGAACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTT
CACAGTGGAATAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTG
AGGTTTGCCAAATCGAAGACGATTCAAAACGAACTAATGGGCCCCGAAAGGCCCAAAATAACAAG
TACTCCAAATGAGCTAAAAACTTCACAGTGGACAAATCTCACCAAAATGATTATAGTTAGGCCAT
AAACAATGGAAAGAAAAGCATTGAGGGTTGCAAAATCGAAGACGATTCAAAACGGAACTAATGGG
GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACAAA
AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGA
TTCAAAACG
Done.