Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011734.1 Corchorus olitorius cultivar O-4 contig11767, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1202
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41


Found at i:425 original size:154 final size:154

Alignment explanation


    Indices: 4--1202  Score: 1822
    Period size: 154  Copynumber: 7.8  Consensus size: 154

          1 ATC

                         *     *         *                                   
          4 GGGGCCCATTAGTGTCGTTCTGAATCGTCATCGATTTGGCAACCCTCGATGCTTTTCTTTCCATT
          1 GGGGCCCATTAGTTTCGTTTTGAATCGTCTTCGATTTGGCAACCCTCGATGCTTTTCTTTCCATT

                         *             *                                     
         69 GTTTATGG-CTAATTATAATCATTTTGCTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
         66 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG

                                   *
        133 AACACTTGTTATTTTAGGCCTTCC
        131 AACACTTGTTATTTTAGGCCTTCT

                                                   *  *    *             *   
        157 GGGGCCCATTAG-TTCGTTTTGAATCGTCTTCGATTTGGGAAACCTCAATG-TTTTCTTTCGATT
          1 GGGGCCCATTAGTTTCGTTTTGAATCGTCTTCGATTTGGCAACCCTCGATGCTTTTCTTTCCATT

                                                     *                *      
        220 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCTTATTTGG
         66 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG

                                    
        285 AACACTTGTTATTTTAGGCCTTCT
        131 AACACTTGTTATTTTAGGCCTTCT

                *            *           *       *                  *        
        309 GGGGGCCATTAGTTTCGATTTGAATCGTCATCGATTTCGCAACCCTCGATGCTTTTGTTTCCATT
          1 GGGGCCCATTAGTTTCGTTTTGAATCGTCTTCGATTTGGCAACCCTCGATGCTTTTCTTTCCATT

                                                                             
        374 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
         66 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG

                                    
        439 AACACTTGTTATTTTAGGCCTT-T
        131 AACACTTGTTATTTTAGGCCTTCT

                           *                               *                 
        462 CGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTTGATGCTTTTCTTTCCAT
          1 -GGGGCCCATTAGTTTCGTTTTGAATCGTCTTCGATTTGGCAACCCTCGATGCTTTTCTTTCCAT

                     *                  *                                    
        527 TGTTTATGGGCTAACTATAATCATTTTGCTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG
         65 TGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG

                        *   *         
        592 GAACACTTGTTAATTTGGGCCTATC-
        130 GAACACTTGTTATTTTAGGCCT-TCT

                         **                           *    *             *   
        617 GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCGATT
          1 GGGGCCCATTAGTTTCGTTTTGAATCGTCTTCGATTTGGCAACCCTCGATGCTTTTCTTTCCATT

            *               *                                                
        682 ATTTATGGCCTAACTAAAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
         66 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG

                                   *
        747 AACACTTGTTATTTTAGGCCTTCC
        131 AACACTTGTTATTTTAGGCCTTCT

                                         *                          *      * 
        771 GGGGCCCATTAGTTTCGTTTTGAATCGTCATCGATTTGGCAA-CCTCGATGCTTTTGTTTCCAAT
          1 GGGGCCCATTAGTTTCGTTTTGAATCGTCTTCGATTTGGCAACCCTCGATGCTTTTCTTTCCATT

                    *                  *               *           *         
        835 GTTTATGGGCTAACTATAATCATTTTGCTGAGATTAGTCCACTATGAAGTTTTTAACTCATTTGG
         66 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG

                           *         
        900 AACACTTGTTA-TTTCGGCCTATC-
        131 AACACTTGTTATTTTAGGCCT-TCT

                         **                           *    *             *   
        923 GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCGATT
          1 GGGGCCCATTAGTTTCGTTTTGAATCGTCTTCGATTTGGCAACCCTCGATGCTTTTCTTTCCATT

                                                                  *          
        988 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTGGCTCATTTGG
         66 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG

                                    *
       1053 AACACTTGTTATTTTAGGCCTTTCG
        131 AACACTTGTTATTTTAGGCC-TTCT

                          *                                                  
       1078 GGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGTCAACCCTTCGATGTCTTTTCTTTCC
          1 GGGGCCCATTAGTTTCGTTTTGAATCGTCTTCGATTTGG-CAACCC-TCGATG-CTTTTCTTTCC

                         *                                               
       1143 A-TGTTTATGGGCGTAACTATAATCATTTTGGTTGAGATTAGTCCACTGTGAAGTTTTTAG
         63 ATTGTTTAT-GGCCTAACTATAATCATTTTGG-TGAGATTAGTCCACTGTGAAGTTTTTAG


Statistics
Matches: 949,  Mismatches: 80, Indels: 28
        0.90            0.08        0.03

Matches are distributed among these distances:
 151   20  0.02
 152  165  0.17
 153  226  0.24
 154  423  0.45
 155   39  0.04
 156    5  0.01
 157   12  0.01
 158   32  0.03
 159   27  0.03

ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41


Consensus pattern (154 bp):   
GGGGCCCATTAGTTTCGTTTTGAATCGTCTTCGATTTGGCAACCCTCGATGCTTTTCTTTCCATT
GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
AACACTTGTTATTTTAGGCCTTCT

Done.