Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011743.1 Corchorus olitorius cultivar O-4 contig11776, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1772
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Found at i:684 original size:154 final size:154
Alignment explanation
Indices: 1--1762 Score: 2522
Period size: 154 Copynumber: 11.5 Consensus size: 154
* **
1 TTATAGTTAGACCATAAACAATGGAAAGAAAAGCATAAAGGTTT-CCAAAATCGAAGACGATTCA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCC-AAATCGAAGACGATTCA
* * *
65 AAACGTCACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTATAAATTTCA
65 AAACGTAACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCA
* *
130 GAGTGGACTAATTTCACCAAAATGA
130 CAGTGGACTAATCTCACCAAAATGA
* * *
155 TTATACTTAGGCCA-AAACCAATGGAAAGAAAAGCATTGAGTTTTGCCAAATCGAAGACGATCCA
1 TTATAGTTAGGCCATAAA-CAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCA
* * * * *
219 ATACGTCACTAATGGGCCCCGATAGG-CCAAAATAACAAGTATTCCAAATGACCTAAAAACTTCA
65 AAACGTAACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCA
283 CAGTGGACTAATCTCACCAAAA-GA
130 CAGTGGACTAATCTCACCAAAATGA
* * *
307 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCTAAATCGAAGACGATTCAA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
* *
372 AACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
66 AACGTAACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
* * *
437 AGTGGAGTAATCTAAACCAAAATAA
131 AGTGGACTAATCT-CACCAAAATGA
* * ** * * *
462 TTATCGTTAGGCCCTAAACAATTTAAAGAAAAGCATGGAGGTTTGCCGAATCGAAGACGATTCCA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
* * * * * * *
527 TACGTCACTAATGGCCCACGATAGGCCCAAAATAATAAGTGTTCCAAATTAGCTAAAAACTTCAA
66 AACGTAACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
** *
592 AGTGGACTAATCAAAACAAAATGA
131 AGTGGACTAATCTCACCAAAATGA
* * * *
616 TTATAGTTAGGCCGTAAACAATGGAAACAAAAGCATTAAGGTTTGCCAAATCGAAGAAGATTCAA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
* * * *
681 TACGTCACTAATGGGCCTCGATAGGCCCAAAATAATAAGTGTTCCAAATGAGCTAAAAACTTTAC
66 AACGTAACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
*
746 AGTCGACTAATCTCACCAAAATGA
131 AGTGGACTAATCTCACCAAAATGA
* *
770 TTATAGTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTTG-CAAATCAAAGACGATTCAA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
* * *
834 AACGGAACTAATGGGCCTCAATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAAGTTCAC
66 AACGTAACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
899 AGTGGACTAATCTCACCAAAATGA
131 AGTGGACTAATCTCACCAAAATGA
* *
923 TTATTGTTAGGCCATAAACGATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGAC-ATTTCA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGA-TTCA
* * *
987 AAACAG-AACTAATGGGCCTCAATAGGCCCAAAATAACAAGTGTTCCAAATGGGCTAAAAAGTTC
65 AAAC-GTAACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTC
1051 ACAGTGGACTAATCTCACCAAAATGA
129 ACAGTGGACTAATCTCACCAAAATGA
* * *
1077 TTATAGTTAGGCCATAAACGATGGAAAGAAAAGTATTGAGGTTTGCCATATCGAAGAC-ATTTCA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGA-TTCA
1141 AAACAG-AACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTC
65 AAAC-GTAACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTC
*
1205 ACAATGGACTAATCTCACCAAAATGA
129 ACAGTGGACTAATCTCACCAAAATGA
*
1231 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCACTGAGGTTTGCCAAATCGAAGACGATTCAA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
* *
1296 AACGGAACTAATGGGCCTCGATAGACCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
66 AACGTAACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
1361 AGTGGACTAATCTCACCAAAATGA
131 AGTGGACTAATCTCACCAAAATGA
* * * * *
1385 TTATAATTAGGCCATAAACAATGGAAAGAAAAGCATTGAGATTTCCCAAATCGAAGACAATTCAG
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
* *
1450 AACG-ACACTAATGGGTCC-CGATAGGCCCTAAATAACAAGTGTTTACAAATGAGCTAAAAACTT
66 AACGTA-ACTAATGGG-CCTCGATAGGCCCAAAATAACAAGTG-TTCCAAATGAGCTAAAAACTT
** *
1513 CACAGTGTTCTAATCTCACCGAAATGA
128 CACAGTGGACTAATCTCACCAAAATGA
* * * * *
1540 TTACATTTAGGCTATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
* * * * * * *
1605 AACGGAACTAATGGACCCCGAAAGGACTAAAATAACAAGTGTTCCAAATGAGTTAAAAACTTCAC
66 AACGTAACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
1670 AGTGGACTAATCTCACCAAAATGA
131 AGTGGACTAATCTCACCAAAATGA
* * *
1694 TTATAGTTAGGCCATAAACAATGG-AAGAAAAACATTGAGGTTTACCAAATCGAAGACGATTTAA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
1758 AACGT
66 AACGT
1763 CACTGATAGG
Statistics
Matches: 1452, Mismatches: 140, Indels: 33
0.89 0.09 0.02
Matches are distributed among these distances:
152 79 0.05
153 291 0.20
154 819 0.56
155 262 0.18
156 1 0.00
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (154 bp):
TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
AACGTAACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
AGTGGACTAATCTCACCAAAATGA
Found at i:919 original size:461 final size:461
Alignment explanation
Indices: 1--1761 Score: 2534
Period size: 461 Copynumber: 3.8 Consensus size: 461
* **
1 TTATAGTTAGACCATAAACAATGGAAAGAAAAGCATAAAGGTTT-CCAAAATCGAAGACGATTCA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCC-AAATCGAAGACGATTCA
* *
65 AAACGTCACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTATAAATTTCA
65 AAACGTCACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCA
* * *
130 GAGTGGACTAATTTCACCAAAATGATTATACTTAGGCCA-AAACCAATGGAAAGAAAAGCATTGA
130 CAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAA-CAATGGAAAGAAAAGCATTGA
* * * * *
194 GTTTTGCCAAATCGAAGACGATCCAATACGTCACTAATGGGCCCCGATAGG-CCAAAATAACAAG
194 GGTTTGCCAAATCGAAGAAGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAATAACAAG
* *
258 TATTCCAAATGACCTAAAAACTTCACAGTGGACTAATCTCACCAAAA-GATTATAGTTAGGCCAT
259 TGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCAT
* * *
322 AAACAATGGAAAGAAAAGCATCGAGGGTTGCTAAATCGAAGACGATTCAAAACGGAACTAATGGG
324 AAACAATGGAAAGAAAAACATTGAGGTTTGC-AAATCGAAGACGATTCAAAACGGAACTAATGGG
* * *
387 CCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGAGTAATCTAA
388 CCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCT-C
*
452 ACCAAAATAA
452 ACCAAAATGA
* * ** * * *
462 TTATCGTTAGGCCCTAAACAATTTAAAGAAAAGCATGGAGGTTTGCCGAATCGAAGACGATTCCA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
* * * * * *
527 TACGTCACTAATGGCCCACGATAGGCCCAAAATAATAAGTGTTCCAAATTAGCTAAAAACTTCAA
66 AACGTCACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
** * * * *
592 AGTGGACTAATCAAAACAAAATGATTATAGTTAGGCCGTAAACAATGGAAACAAAAGCATTAAGG
131 AGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGG
* * * *
657 TTTGCCAAATCGAAGAAGATTCAATACGTCACTAATGGGCCTCGATAGGCCCAAAATAATAAGTG
196 TTTGCCAAATCGAAGAAGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
* *
722 TTCCAAATGAGCTAAAAACTTTACAGTCGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
261 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
*
787 ACAATGGAAAGAAAAACATTGAGGTTTGCAAATCAAAGACGATTCAAAACGGAACTAATGGGCCT
326 ACAATGGAAAGAAAAACATTGAGGTTTGCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCT
* *
852 CAATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAAGTTCACAGTGGACTAATCTCACCA
391 CGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCA
917 AAATGA
456 AAATGA
* *
923 TTATTGTTAGGCCATAAACGATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGAC-ATTTCA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGA-TTCA
* * * *
987 AAACAG-AACTAATGGGCCTCAATAGGCCCAAAATAACAAGTGTTCCAAATGGGCTAAAAAGTTC
65 AAAC-GTCACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTC
* *
1051 ACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACGATGGAAAGAAAAGTATTGA
129 ACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGA
* * *
1116 GGTTTGCCATATCGAAGACA-TTTCAAAACAG-AACTAATGGGCCTCGATAGGCCCAAAATAACA
194 GGTTTGCCAAATCGAAGA-AGATTCAAAAC-GTAACTAATGGGCCCCGATAGGCCCAAAATAACA
*
1179 AGTGTTCCAAATGAGCTAAAAACTTCACAATGGACTAATCTCACCAAAATGATTATAGTTAGGCC
257 AGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCC
* *
1244 ATAAACAATGGAAAGAAAAGCACTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATG
322 ATAAACAATGGAAAGAAAAACATTGAGGTTTG-CAAATCGAAGACGATTCAAAACGGAACTAATG
*
1309 GGCCTCGATAGACCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCT
386 GGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCT
1374 CACCAAAATGA
451 CACCAAAATGA
* * * * *
1385 TTATAATTAGGCCATAAACAATGGAAAGAAAAGCATTGAGATTTCCCAAATCGAAGACAATTCAG
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
* * *
1450 AACGACACTAATGGGTCC-CGATAGGCCCTAAATAACAAGTGTTTACAAATGAGCTAAAAACTTC
66 AACGTCACTAATGGG-CCTCGATAGGCCCAAAATAACAAGTG-TTCCAAATGAGCTAAAAACTTC
** * * * * *
1514 ACAGTGTTCTAATCTCACCGAAATGATTACATTTAGGCTATAAACAATGGAAAGAAAAGCATCGA
129 ACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGA
* * * * * * *
1579 GGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGACCCCGAAAGGACTAAAATAACAAG
194 GGTTTGCCAAATCGAAGAAGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAATAACAAG
*
1644 TGTTCCAAATGAGTTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCAT
259 TGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCAT
* *
1709 AAACAATGG-AAGAAAAACATTGAGGTTTACCAAATCGAAGACGATTTAAAACG
324 AAACAATGGAAAGAAAAACATTGAGGTTT-GCAAATCGAAGACGATTCAAAACG
1762 TCACTGATAG
Statistics
Matches: 1164, Mismatches: 120, Indels: 31
0.89 0.09 0.02
Matches are distributed among these distances:
460 1 0.00
461 527 0.45
462 388 0.33
463 248 0.21
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.22
Consensus pattern (461 bp):
TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
AACGTCACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
AGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGG
TTTGCCAAATCGAAGAAGATTCAAAACGTAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
ACAATGGAAAGAAAAACATTGAGGTTTGCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCT
CGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCA
AAATGA
Found at i:1171 original size:615 final size:614
Alignment explanation
Indices: 1--1762 Score: 2555
Period size: 615 Copynumber: 2.9 Consensus size: 614
* *
1 TTATAGTTAGACCATAAACAATGGAAAGAAAAGCATAAAGGTTT-CCAAAATCGAAGACGATTCA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTAAGGTTTGCC-AAATCGAAGACGATTCA
*
65 AAACGTCACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTATAAA-TTTC
65 AAACGTCACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTT-
* * *
129 AGAGTGGACTAATTTCACCAAAATGATTATACTTAGGCCA-AAACCAATGGAAAGAAAAGCATTG
129 ACAGTGGACTAATCTCACCAAAATGATTATAATTAGGCCATAAA-CAATGGAAAGAAAAGCATTG
* * * **
193 AGTTTTGCCAAATCGAAGACGATCCAATACGTCACTAATGGGCCCCGATAGG-CCAAAATAACAA
193 AGATTTG-CAAATCGAAGACGATTCAAAACGGAACTAATGGG-CCCGATAGGCCCAAAATAACAA
* * *
257 GTATTCCAAATGACCTAAAAACTTCACAGTGGACTAATCTCACCAAAA-GATTATAGTTAGGCCA
256 GTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATTGTTAGGCCA
*
321 TAAACAATGGAAAGAAAAGCATCGAGGGTTGCTAAATCGAAGACGATTCAAAACGGAACTAATGG
321 TAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGG
* *
386 GCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGAGTAATCTA
386 GCCCCAATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCT-
* * * * ** *
451 AACCAAAATAATTATCGTTAGGCCCTAAACAATTTAAAGAAAAGCATGGAGGTTTGCCGAATCGA
450 CACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCC-AATCGA
* * * * *
516 AGACGA-TTCCATACGTCACTAATGGCCCACGATAGGCCCAAAATAATAAGTGTTCCAAATTAGC
514 AGACGATTTCAAAACGTAACTAATGGCCCACGATAGGCCCAAAATAACAAGTGTTCCAAATGAGC
580 TAAAAACTTCA-AAGTGGACTAATCAAAACAAAATGA
579 TAAAAACTTCACAA-TGGACTAATCAAAACAAAATGA
* * *
616 TTATAGTTAGGCCGTAAACAATGGAAACAAAAGCATTAAGGTTTGCCAAATCGAAGAAGATTCAA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTAAGGTTTGCCAAATCGAAGACGATTCAA
* *
681 TACGTCACTAATGGGCCTCGATAGGCCCAAAATAATAAGTGTTCCAAATGAGCTAAAAACTTTAC
66 AACGTCACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTTAC
* * * *
746 AGTCGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACATTGAGG
131 AGTGGACTAATCTCACCAAAATGATTATAATTAGGCCATAAACAATGGAAAGAAAAGCATTGAGA
* *
811 TTTGCAAATCAAAGACGATTCAAAACGGAACTAATGGGCCTCAATAGGCCCAAAATAACAAGTGT
196 TTTGCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC-CGATAGGCCCAAAATAACAAGTGT
*
876 TCCAAATGAGCTAAAAAGTTCACAGTGGACTAATCTCACCAAAATGATTATTGTTAGGCCATAAA
260 TCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATTGTTAGGCCATAAA
* * * *
941 CGATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGAC-ATTTCAAAACAGAACTAATGGGCC
325 CAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGA-TTCAAAACGGAACTAATGGGCC
* * *
1005 TCAATAGGCCCAAAATAACAAGTGTTCCAAATGGGCTAAAAAGTTCACAGTGGACTAATCTCACC
389 CCAATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* *
1070 AAAATGATTATAGTTAGGCCATAAACGATGGAAAGAAAAGTATTGAGGTTTGCCATATCGAAGAC
454 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCA-ATCGAAGAC
* *
1135 -ATTTCAAAACAG-AACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
518 GATTTCAAAAC-GTAACTAATGGCCCACGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
** *
1198 AAACTTCACAATGGACTAATCTCACCAAAATGA
582 AAACTTCACAATGGACTAATCAAAACAAAATGA
* *
1231 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCACTGAGGTTTGCCAAATCGAAGACGATTCAA
1 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTAAGGTTTGCCAAATCGAAGACGATTCAA
** * *
1296 AACGGAACTAATGGGCCTCGATAGACCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
66 AACGTCACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTTAC
1361 AGTGGACTAATCTCACCAAAATGATTATAATTAGGCCATAAACAATGGAAAGAAAAGCATTGAGA
131 AGTGGACTAATCTCACCAAAATGATTATAATTAGGCCATAAACAATGGAAAGAAAAGCATTGAGA
* * * *
1426 TTTCCCAAATCGAAGACAATTCAGAAC-GACACTAATGGGTCCCGATAGGCCCTAAATAACAAGT
196 TTT-GCAAATCGAAGACGATTCAAAACGGA-ACTAATGGG-CCCGATAGGCCCAAAATAACAAGT
* ** * * *
1490 GTTTACAAATGAGCTAAAAACTTCACAGTGTTCTAATCTCACCGAAATGATTACAT-TTAGGCTA
258 G-TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA-TTGTTAGGCCA
1554 TAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGG
321 TAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGG
* * * *
1619 ACCCCGAA-AGGACTAAAATAACAAGTGTTCCAAATGAGTTAAAAACTTCACAGTGGACTAATCT
386 GCCCC-AATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCT
* *
1683 CACCAAAATGATTATAGTTAGGCCATAAACAATGG-AAGAAAAACATTGAGGTTTACCAAATCGA
450 CACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCC-AATCGA
1747 AGACGATTT-AAAACGT
514 AGACGATTTCAAAACGT
1763 CACTGATAGG
Statistics
Matches: 1030, Mismatches: 96, Indels: 41
0.88 0.08 0.04
Matches are distributed among these distances:
613 2 0.00
614 37 0.04
615 555 0.54
616 225 0.22
617 207 0.20
618 4 0.00
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (614 bp):
TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTAAGGTTTGCCAAATCGAAGACGATTCAA
AACGTCACTAATGGGCCTCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTTAC
AGTGGACTAATCTCACCAAAATGATTATAATTAGGCCATAAACAATGGAAAGAAAAGCATTGAGA
TTTGCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCGATAGGCCCAAAATAACAAGTGTT
CCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATTGTTAGGCCATAAAC
AATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCC
AATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAA
AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAATCGAAGACGAT
TTCAAAACGTAACTAATGGCCCACGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
TTCACAATGGACTAATCAAAACAAAATGA
Done.