Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011745.1 Corchorus olitorius cultivar O-4 contig11778, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1860
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Found at i:217 original size:22 final size:22

Alignment explanation


    Indices: 190--235  Score: 83
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        180 AAATGACCAC

                                  
        190 AACAAAATAAATACTTATACTT
          1 AACAAAATAAATACTTATACTT

                            *     
        212 AACAAAATAAATACTTGTACTT
          1 AACAAAATAAATACTTATACTT

              
        234 AA
          1 AA

        236 AAGGACCAAT


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.54, C:0.13, G:0.02, T:0.30


Consensus pattern (22 bp):   
AACAAAATAAATACTTATACTT

Found at i:1525 original size:12 final size:13

Alignment explanation


    Indices: 1505--1533  Score: 51
    Period size: 12  Copynumber: 2.3  Consensus size: 13

       1495 GGACCCAATA

                         
       1505 AATTCTTAATTGG
          1 AATTCTTAATTGG

                         
       1518 AATT-TTAATTGG
          1 AATTCTTAATTGG

                
       1530 AATT
          1 AATT

       1534 AAAGGATCCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48


Consensus pattern (13 bp):   
AATTCTTAATTGG
Done.