Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011750.1 Corchorus olitorius cultivar O-4 contig11783, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 840

Length: 1401
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40


Found at i:285 original size:154 final size:154

Alignment explanation


    Indices: 1--1401  Score: 2153
    Period size: 154  Copynumber: 9.1  Consensus size: 154

                                                                             
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGC
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGC

                                                      *                      
         66 AAACCTCAATGCTTTTCTTTCCATTGTTTAT-GCTCTAACTACAATCATTTTGGTGAGATTAGTC
         66 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGC-CTAACTATAATCATTTTGGTGAGATTAGTC

              *                      
        130 CATTGTGAAGTTTTTAGCTCATTTG
        130 CACTGTGAAGTTTTTAGCTCATTTG

               *                                                             
        155 GAATACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGC
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGC

                               **            *                               
        220 AAACCTCAATGCTTTTCTTAGCATTGTTTATGGTCTAACTATAATCATTTTGGTGAGATTAGTCC
         66 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC

                    *               
        285 ACTGTGAACTTTTTAGCTCATTTG
        131 ACTGTGAAGTTTTTAGCTCATTTG

            *                                      *    *        *           
        309 CAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGT-TCTGTTTTGAATCGCCTTCGATTTGG
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGAC-GTATTGAATCGTCTTCGATTTGG

                                           *               *               * 
        373 CAAACCTCAATGCTTTTCTTTCCATTGTTTAAGGCCTAACTATAATCGTTTTGGTGAGATTAGGC
         65 CAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTC

                     *               
        438 CACTGTGAACTTTTTAGCTCATTTG
        130 CACTGTGAAGTTTTTAGCTCATTTG

            *                                      *    *        *           
        463 CAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGT-TCTGTTTTGAATCGCCTTCGATTTGG
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGAC-GTATTGAATCGTCTTCGATTTGG

                              *           *   *           *                  
        527 CAAACCTCAATGCTTTTCATTCCATTGTTTGTGGTCTAACTATAATTATTTTGGTGAGATTAGTC
         65 CAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTC

              *                      
        592 CATTGTGAAGTTTTTAGCTCATTTG
        130 CACTGTGAAGTTTTTAGCTCATTTG

               *                                                             
        617 GAATACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGC
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGC

                                                                             
        682 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
         66 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC

                      *           * 
        747 ACTGTGAAGTGTTTAGCTCATTCG
        131 ACTGTGAAGTTTTTAGCTCATTTG

                              *           *  *    **   *                     
        771 GAACACTTGTTATTTTGGACCTATCGGGGCTCAATAGTTCCGTTTTGAATCGTCTTCGATTTGGC
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGC

                                    *                   *                    
        836 AAACCTCAATGCTTTTCTTTCCATCGTTTATGGCCTAACTATAAACATTTTGGTGAGATTAGTCC
         66 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC

                                    * 
        901 ACTGTGAAGTTTTTAGTGCTCATTCG
        131 ACTGTGAAGTTTTTA--GCTCATTTG

                        *       *         **     * **   *                    
        927 GAACACTTGTTACTTTGGGCTTATCGGGGAGTCATTAATTCCGTTTTGAATCGTCTTCGATTTGG
          1 GAACACTTGTTATTTTGGGCCTATCGGGG-CCCATTAGTGACGTATTGAATCGTCTTCGATTTGG

                         *                    *        *                     
        992 CAAACCTCAATGCCTTTCTTTCCATTGTTTATGGTCTAACTATGATCATTTTGGTGAGATTAGTC
         65 CAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTC

              *   *                   
       1057 CATTGTAAAGATTTTTAGCTCATTTG
        130 CACTGTGAAG-TTTTTAGCTCATTTG

               *                                                             
       1083 GAATACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGC
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGC

                                                                  *          
       1148 -AACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTTAGATTAGTCC
         66 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC

                    *         *     
       1212 ACTGTGAACTTTTTAGCTAATTTG
        131 ACTGTGAAGTTTTTAGCTCATTTG

                                *                              *     * *     
       1236 GAACACTTGTTATTTTGGGCTTATCGGGGCCCATTAGTGACGTATTGAATCTTCTTCAAATTGGC
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGC

              *             *                    *                  *        
       1301 AAGCCTCAATGCTTTTGTTTCCATTGTTTATGGCCTACCTATAATCATTTTGGTGAAATTAGTCC
         66 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC

                    *               
       1366 ACTGTGAACTTTTTAGCTCATTTG
        131 ACTGTGAAGTTTTTAGCTCATTTG

                        
       1390 GAACACTTGTTA
          1 GAACACTTGTTA


Statistics
Matches: 1148,  Mismatches: 91, Indels: 16
        0.91            0.07        0.01

Matches are distributed among these distances:
 153   75  0.07
 154  866  0.75
 155   32  0.03
 156   69  0.06
 157  100  0.09
 158    6  0.01

ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40


Consensus pattern (154 bp):   
GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGC
AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
ACTGTGAAGTTTTTAGCTCATTTG

Done.