Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011754.1 Corchorus olitorius cultivar O-4 contig11787, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 893

Length: 1489
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38


Found at i:802 original size:154 final size:154

Alignment explanation


    Indices: 514--1489  Score: 1371
    Period size: 154  Copynumber: 6.4  Consensus size: 154

        504 ATTCGTATCA

                               *            *             *                  
        514 CTAACTATAATCATTTTGGAGAGATTAGTCCACTGTGAAGTTTTTAACTCATTTGGAACACTTGT
          1 CTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACTTGT

                  *                  *               *               *       
        579 TATTTTAGGCCTATCGGGGCCCATTGGTTCCGTTTTGAATCATCTTCGATTTGGCAATCCTCGAA
         66 TATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTC-AA

                        *             
        644 -GCTTTTCTTT-AAGTTGTTTATGGC
        130 TGCTTTTCTTTCCA-TTGTTTATGGC

                       *                  *                                  
        668 CTAACTATAATAATTTTGGTGAGATTAGTCGATTGTGAAGTTTTTAGCTCATTTGGAACACTTGT
          1 CTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACTTGT

                              **     *                 *                 *   
        733 TATTTTGGGCCTATCGGGTACCATTCGTTCCGTTTTGAATCGTTTTCGATTTGGCAAACCTAAAT
         66 TATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAT

                       *            
        798 GCTTTTCTTTCTATTGTTTATGGC
        131 GCTTTTCTTTCCATTGTTTATGGC

                                          *                                  
        822 CTAACTATAATCATTTTGGTGAGATTAGTCGATTGTGAAGTTTTTAGCTTCATTTGGAACACTTG
          1 CTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGC-TCATTTGGAACACTTG

                                                                             
        887 TTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAA
         65 TTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAA

                                      
        952 TGCTTTTCTTTCCATTGTTTATGGTC
        130 TGCTTTTCTTTCCATTGTTTATGG-C

                           *                *                                
        978 CTAACTATAATCATTATGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGT
          1 CTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACTTGT

                *                                            *       *       
       1043 TATTGTGGGCCTATCGGGGCCCATTAGTT-CG-TTTGAATCGTCTTC-AATTGGCAAGCCTCAAT
         66 TATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAT

              *   *                 
       1105 GCGTTTGTTTCCATTGTTTATGGC
        131 GCTTTTCTTTCCATTGTTTATGGC

                *              * *                                           
       1129 C-AGCCTATAATCATTTTGTTTAGATTAGTCCACTT-TGAAGTTTTTAGCTCATTTGGAACACTT
          1 CTA-ACTATAATCATTTTGGTGAGATTAGTCCA-TTGTGAAGTTTTTAGCTCATTTGGAACACTT

                                          ** * *                             
       1192 GTTATTTTGGGCCTATCGGGGCCCATTAGTGACATATTGAA-CTGTCTTCGATTTGGCAAACCTC
         64 GTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATC-GTCTTCGATTTGGCAAACCTC

                *      *     *         
       1256 AATGATTTTCTATCCATGGTTTATGGC
        128 AATGCTTTTCTTTCCATTGTTTATGGC

                       * *                  *                                
       1283 CTAACTATAATTAATTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGT
          1 CTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACTTGT

                                        **   *       *       *       *       
       1348 TATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCTTCTTCGAATTGGCAAGCCTCAAT
         66 TATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAT

              *   *                 
       1413 GCGTTTGTTTCCATTGTTTATGGC
        131 GCTTTTCTTTCCATTGTTTATGGC

               *              * *                                   
       1437 CTACCTATAAT-A-TTTGCTTAGATTAGTCCACTT-TGAAGTTTTTAGCTCATTTG
          1 CTAACTATAATCATTTTGGTGAGATTAGTCCA-TTGTGAAGTTTTTAGCTCATTTG


Statistics
Matches: 744,  Mismatches: 64, Indels: 30
        0.89            0.08        0.04

Matches are distributed among these distances:
 150    1  0.00
 151   84  0.11
 152   75  0.10
 153   30  0.04
 154  361  0.49
 155  147  0.20
 156   46  0.06

ACGTcount: A:0.22, C:0.18, G:0.20, T:0.41


Consensus pattern (154 bp):   
CTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACTTGT
TATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAT
GCTTTTCTTTCCATTGTTTATGGC
Done.