Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011760.1 Corchorus olitorius cultivar O-4 contig11793, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1952
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36


Found at i:1723 original size:154 final size:154

Alignment explanation


    Indices: 790--1952  Score: 1738
    Period size: 154  Copynumber: 7.6  Consensus size: 154

        780 TGGCGCATCA

                 *                                             *             
        790 CTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTGAATGCTTTTCTTT
          1 CTATCAGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTT

               *                                              *              
        855 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTTAAGTTTTTAGCTCA
         66 CCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA

                                    
        920 TTTGGAACACTTGTTATTTTGGGC
        131 TTTGGAACACTTGTTATTTTGGGC

            *     *  *     *                                                 
        944 ATATCAAGGACCATTCGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTT
          1 CTATCAGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTT

                        *      *                                   *     *   
       1009 CCAATGTTTATGACCTAACAATAATCATTTTGGTAGAGATTAGTCCGACTGTGAATTTTTTGGCT
         66 CCAATGTTTATGGCCTAACTATAATCATTTTGGT-GAGATTAGTCC-ACTGTGAAGTTTTTAGCT

                *         *           
       1074 CATTAGGAACACTTTTTATTTTGGGC
        129 CATTTGGAACACTTGTTATTTTGGGC

                 *            **           *      *                          
       1100 CTATCGGGGCCCATTAGTGACGTTTTGAATCATCTTCGGTTTGGCAACCCTCAATGCTTTTCTTT
          1 CTATCAGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTT

                          *                   *                              
       1165 CCAATGTTTATGGCTTAACTATAATCA-TTTGGTAAGATTAGTCCACT-TGAAG-TTTTAGCTCA
         66 CCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA

                   *                 
       1227 TTTGGAAAACTTGTTATTTTGGGTC
        131 TTTGGAACACTTGTTATTTTGGG-C

                                                           *                 
       1252 CTATCAGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
          1 CTATCAGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTT

               *                                    *                        
       1317 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTGGTCCACTGTGAAG-TTTTAGCTCA
         66 CCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA

            *                       
       1381 CTTGGAACACTTG-TA-TTTGGGC
        131 TTTGGAACACTTGTTATTTTGGGC

            *         *                    *                               * 
       1403 ATATC-GAGGACCATTAG-TCCGTTTTGAATTGTCTTCGATTTGGCAACCCTCAATGC-TTTCGT
          1 CTATCAG-GGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTT

                *               *                                       * *  
       1465 TCCATTGTTTATGGCCTAACAATAATCA-TTTGGTGAGATTAGTCCACTGTGAA-TTTTTGGTTC
         65 TCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC

               *         *           
       1528 ATTAGGAACACTTTTTATTTTGGGC
        130 ATTTGGAACACTTGTTATTTTGGGC

                 *            **           *      *                          
       1553 CTATCGGGGCCCATTAGTGACGTTTTGAATCATCTTCGGTTTGGCAACCCTCAATGCTTTTCTTT
          1 CTATCAGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTT

                          *                   *             *                
       1618 CCAATGTTTATGGCTTAACTATAATCATTTTGGTAAGATTAGTCCACTTTGAAGTTTTTAGCTCA
         66 CCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA

                   *                
       1683 TTTGGAAAACTTGTTATTTTGGGC
        131 TTTGGAACACTTGTTATTTTGGGC

                                                           *                 
       1707 CTATCAGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
          1 CTATCAGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTT

               *                                                             
       1772 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
         66 CCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA

                                     
       1837 CTTTGGAACACTTGTTATTTTGGGC
        131 -TTTGGAACACTTGTTATTTTGGGC

            *         *                                                      
       1862 ATATC-GAGGACCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTT
          1 CTATCAG-GGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTT

                       *               
       1926 TCCAATGTTTACGGCCTAACTATAATC
         65 TCCAATGTTTATGGCCTAACTATAATC


Statistics
Matches: 903,  Mismatches: 90, Indels: 31
        0.88            0.09        0.03

Matches are distributed among these distances:
 148   42  0.05
 149   34  0.04
 150   58  0.06
 151   78  0.09
 152  125  0.14
 153   46  0.05
 154  277  0.31
 155  124  0.14
 156  119  0.13

ACGTcount: A:0.22, C:0.20, G:0.19, T:0.40


Consensus pattern (154 bp):   
CTATCAGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTT
CCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
TTTGGAACACTTGTTATTTTGGGC
Done.