Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011767.1 Corchorus olitorius cultivar O-4 contig11800, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3315
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25


Found at i:517 original size:16 final size:16

Alignment explanation


    Indices: 496--527  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        486 ACCAGGGCAA

                            
        496 CTAATGTCGAGCATAC
          1 CTAATGTCGAGCATAC

                            
        512 CTAATGTCGAGCATAC
          1 CTAATGTCGAGCATAC

        528 GACGATGCCG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25


Consensus pattern (16 bp):   
CTAATGTCGAGCATAC
Done.