Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011768.1 Corchorus olitorius cultivar O-4 contig11801, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3002
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27


Found at i:2315 original size:22 final size:22

Alignment explanation


    Indices: 2287--2330  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       2277 GGTGAATTGC

                                  
       2287 CTATATAGCTTTGTCCCCTGCA
          1 CTATATAGCTTTGTCCCCTGCA

                                  
       2309 CTATATAGCTTTGTCCCCTGCA
          1 CTATATAGCTTTGTCCCCTGCA

       2331 GCTGCTAGTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.18, C:0.32, G:0.14, T:0.36


Consensus pattern (22 bp):   
CTATATAGCTTTGTCCCCTGCA
Done.