Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011782.1 Corchorus olitorius cultivar O-4 contig11815, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2143
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:1800 original size:17 final size:17

Alignment explanation


    Indices: 1780--1813  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1770 CCTATTCTAT

                             
       1780 TAAAGAAGAATTTCCAA
          1 TAAAGAAGAATTTCCAA

                             
       1797 TAAAGAAGAATTTCCAA
          1 TAAAGAAGAATTTCCAA

       1814 CTCTTTTAAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24


Consensus pattern (17 bp):   
TAAAGAAGAATTTCCAA
Done.