Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011792.1 Corchorus olitorius cultivar O-4 contig11825, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4644
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29


Found at i:940 original size:31 final size:31

Alignment explanation


    Indices: 902--966  Score: 130
    Period size: 31  Copynumber: 2.1  Consensus size: 31

        892 ACGGACAGCG

                                           
        902 CTTTTAGCCTGCCTATAGGGTTCTTTTCGAT
          1 CTTTTAGCCTGCCTATAGGGTTCTTTTCGAT

                                           
        933 CTTTTAGCCTGCCTATAGGGTTCTTTTCGAT
          1 CTTTTAGCCTGCCTATAGGGTTCTTTTCGAT

               
        964 CTT
          1 CTT

        967 GTACCCTATG


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   34  1.00

ACGTcount: A:0.12, C:0.23, G:0.18, T:0.46


Consensus pattern (31 bp):   
CTTTTAGCCTGCCTATAGGGTTCTTTTCGAT
Done.