Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001181.1 Corchorus olitorius cultivar O-4 contig01181, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 676

Length: 1127
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:555 original size:21 final size:21

Alignment explanation


    Indices: 527--597  Score: 117
    Period size: 21  Copynumber: 3.4  Consensus size: 21

        517 TGGTAGGAGA

                                  
        527 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

             *                   
        548 TTATTGGAGAAGGTTCCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                                 
        569 TCATTGGAGAAGGTTCCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                    
        590 TCATTGGA
          1 TCATTGGA

        598 ATTGTCTAAG


Statistics
Matches: 47,  Mismatches: 2, Indels: 2
        0.92            0.04        0.04

Matches are distributed among these distances:
  20    2  0.04
  21   45  0.96

ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC
Done.