Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011811.1 Corchorus olitorius cultivar O-4 contig11844, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11995
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27


Found at i:5233 original size:24 final size:24

Alignment explanation


    Indices: 5206--5253  Score: 78
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       5196 AGACCATAAA

                 *           *      
       5206 TGATTTCGATACAGAAAGCACCGG
          1 TGATTGCGATACAGAAACCACCGG

                                    
       5230 TGATTGCGATACAGAAACCACCGG
          1 TGATTGCGATACAGAAACCACCGG

       5254 CACACCAACC


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19


Consensus pattern (24 bp):   
TGATTGCGATACAGAAACCACCGG

Found at i:8498 original size:28 final size:28

Alignment explanation


    Indices: 8458--8513  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       8448 GCAGGCCCTG

                                        
       8458 CTCAAGGCTTCCTTATTAACTAAGAGAT
          1 CTCAAGGCTTCCTTATTAACTAAGAGAT

                                        
       8486 CTCAAGGCTTCCTTATTAACTAAGAGAT
          1 CTCAAGGCTTCCTTATTAACTAAGAGAT

       8514 ATTGTGTAGG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32


Consensus pattern (28 bp):   
CTCAAGGCTTCCTTATTAACTAAGAGAT
Done.