Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011821.1 Corchorus olitorius cultivar O-4 contig11854, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24672

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1332--1403
18
4.0
18
90
0
108
29
22
11
37
1.88
2664--2705
21
2.0
21
90
0
66
35
23
21
19
1.96
9032--9073
21
2.0
21
100
0
84
33
28
19
19
1.96
10570--10614
16
2.8
16
89
3
72
44
40
11
4
1.60
11591--11632
2
21.0
2
85
9
59
47
0
4
47
1.23
15980--16474
33
15.6
33
64
16
147
50
2
18
28
1.60
16040--16090
24
2.1
24
85
0
66
45
1
19
33
1.62
15980--16150
91
1.9
90
91
3
281
49
2
17
29
1.61
16118--16195
24
3.2
24
70
20
70
57
1
19
21
1.47
16178--16226
19
2.5
19
90
3
71
51
2
16
30
1.56
16039--16442
159
2.6
157
86
6
541
50
2
19
27
1.61
16413--16529
34
3.3
33
76
17
94
47
0
19
33
1.50
17404--17468
23
2.8
23
93
4
105
35
33
9
21
1.85

Tables:   1

The End!