Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011822.1 Corchorus olitorius cultivar O-4 contig11855, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15821
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:15644 original size:21 final size:21

Alignment explanation


    Indices: 15615--15660  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

      15605 CCAATTTAGG

                *           *     
      15615 TTTAGATTTAA-ATTTCTTGTT
          1 TTTAAATTTAAGATTTATT-TT

                                 
      15636 TTTAAATTTAAGATTTATTTT
          1 TTTAAATTTAAGATTTATTTT

                
      15657 TTTA
          1 TTTA

      15661 TGCATCTTAG


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  21   16  0.73
  22    6  0.27

ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63


Consensus pattern (21 bp):   
TTTAAATTTAAGATTTATTTT
Done.