Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011829.1 Corchorus olitorius cultivar O-4 contig11862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41121

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
239--286
24
2.0
23
84
8
60
41
0
27
31
1.56
483--526
22
2.0
22
86
8
63
40
13
4
40
1.65
526--578
22
2.4
22
84
6
63
32
13
9
45
1.75
671--789
45
2.7
45
79
6
118
41
15
10
31
1.82
810--1098
22
13.5
21
73
13
180
34
15
8
41
1.77
808--911
23
4.6
23
80
3
104
38
16
7
37
1.77
832--991
82
1.9
84
85
2
225
34
16
6
43
1.73
1206--1430
22
10.3
21
72
13
89
35
15
9
40
1.80
1267--1370
44
2.4
45
80
9
126
36
13
9
40
1.77
1456--1595
22
6.4
21
72
16
65
35
15
8
40
1.78
1470--1595
44
2.9
43
78
7
128
35
15
9
38
1.80
1600--1788
67
2.8
66
81
7
195
33
17
10
37
1.85
1600--1831
22
10.5
22
74
8
184
34
18
9
37
1.84
1600--1835
66
3.5
66
81
7
244
35
18
9
36
1.84
2295--2349
30
1.9
27
82
10
65
49
3
3
43
1.37
3509--3539
11
2.8
11
95
0
53
0
3
19
77
0.90
3937--4072
31
4.3
31
82
3
146
19
23
24
33
1.97
3948--4066
64
1.9
62
84
3
157
18
21
24
35
1.96
4899--4936
17
2.1
19
90
9
62
15
47
34
2
1.60
5067--5142
16
5.3
15
79
19
74
73
0
23
2
0.95
5096--5142
12
3.8
12
83
8
58
76
0
23
0
0.78
5088--5142
26
2.0
28
86
13
80
76
0
23
0
0.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6374--6430
12
4.8
11
73
14
51
35
3
10
50
1.54
16655--16695
20
2.0
21
95
4
75
60
14
14
9
1.57
19045--19077
17
1.9
17
93
0
57
33
12
24
30
1.91
19270--19449
91
2.0
91
97
0
342
16
17
31
35
1.92
25707--26365
331
2.0
331
95
0
1183
28
11
26
32
1.92
32468--32614
74
2.0
73
95
1
267
36
17
6
39
1.76
34102--34132
4
7.8
4
100
0
62
51
22
0
25
1.48
37670--37736
34
2.0
34
96
0
125
13
11
29
44
1.79
38045--38075
13
2.5
13
94
5
55
58
0
0
41
0.98
38489--38518
6
5.0
6
91
0
51
80
0
20
0
0.72
40100--40140
21
2.0
21
100
0
82
29
21
24
24
1.99
39959--40319
179
2.0
179
100
0
722
31
17
27
23
1.97
40279--40391
21
5.4
21
90
2
158
28
18
25
27
1.98

Tables:   1

The End!