Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011830.1 Corchorus olitorius cultivar O-4 contig11863, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40536

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
825--938
27
4.2
27
78
6
97
28
39
11
21
1.87
2574--2608
17
2.1
17
88
0
52
40
17
5
37
1.73
5537--5569
16
2.1
16
88
11
50
57
6
9
27
1.53
8320--8441
28
4.4
28
90
2
185
17
16
27
39
1.90
8998--9052
25
2.2
25
90
0
83
18
25
10
45
1.82
13419--13490
28
2.6
28
93
4
119
19
16
27
36
1.93
25262--25295
15
2.2
16
94
5
61
14
5
14
64
1.46
30694--30733
15
2.6
16
84
8
55
12
7
12
67
1.41
33362--33502
76
1.9
76
84
3
194
15
32
26
25
1.95

Tables:   1

The End!