Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011833.1 Corchorus olitorius cultivar O-4 contig11866, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 978

Length: 1631
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27


Found at i:299 original size:21 final size:22

Alignment explanation


    Indices: 275--316  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        265 TTTGCCTCAT

                            *     
        275 GCATTCATTCAT-CATGCCATG
          1 GCATTCATTCATGCATCCCATG

                                 
        296 GCATTCATTCATGCATCCCAT
          1 GCATTCATTCATGCATCCCAT

        317 TAAAGCCTAC


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   12  0.63
  22    7  0.37

ACGTcount: A:0.24, C:0.31, G:0.12, T:0.33


Consensus pattern (22 bp):   
GCATTCATTCATGCATCCCATG
Done.