Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011835.1 Corchorus olitorius cultivar O-4 contig11868, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32893

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1334--1627
30
9.7
30
87
0
399
31
18
17
31
1.95
2735--2793
22
2.5
24
78
15
61
23
22
5
49
1.70
3046--3092
9
5.1
9
84
5
58
0
12
2
85
0.70
3056--3087
10
3.3
10
91
8
57
0
9
0
90
0.45
3046--3087
19
2.2
19
91
0
66
0
14
0
85
0.59
5532--5789
132
2.0
131
88
4
387
36
10
2
50
1.50
18651--18720
30
2.3
31
82
5
79
48
11
2
37
1.54
18648--18723
31
2.4
32
76
8
84
47
11
2
38
1.54
20957--20991
6
6.2
6
87
12
56
0
0
17
82
0.66
20958--20990
16
2.1
16
100
0
66
0
0
12
87
0.53
24664--24699
17
2.2
16
90
5
54
58
2
27
11
1.46
28432--28479
23
2.1
23
92
0
78
25
25
16
33
1.96
28682--28709
2
14.0
2
100
0
56
50
0
0
50
1.00
30016--30075
31
1.9
31
89
0
93
28
20
11
40
1.87
30076--30145
36
1.9
36
94
0
122
24
20
11
44
1.84

Tables:   1

The End!