Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011837.1 Corchorus olitorius cultivar O-4 contig11870, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10466
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:2860 original size:1 final size:1

Alignment explanation


    Indices: 2854--2879  Score: 52
    Period size: 1  Copynumber: 26.0  Consensus size: 1

       2844 TTCGGGAAAG

                                      
       2854 TTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTT

       2880 ATTTGAAATT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   25  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.