Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011841.1 Corchorus olitorius cultivar O-4 contig11874, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7000
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34


Found at i:502 original size:11 final size:11

Alignment explanation


    Indices: 486--511  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

        476 CCTTTGCCTA

                       
        486 AAAACTAGAAG
          1 AAAACTAGAAG

                       
        497 AAAACTAGAAG
          1 AAAACTAGAAG

                
        508 AAAA
          1 AAAA

        512 GAAATTATCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.69, C:0.08, G:0.15, T:0.08


Consensus pattern (11 bp):   
AAAACTAGAAG
Done.