Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011844.1 Corchorus olitorius cultivar O-4 contig11877, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72586

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
142--194
15
3.5
15
97
2
97
13
13
13
60
1.60
4861--4895
18
1.9
18
88
0
52
54
11
5
28
1.59
5098--5172
35
2.1
35
97
0
141
41
18
17
22
1.90
9261--9915
327
2.0
327
96
0
1193
36
15
10
37
1.82
11428--11477
24
2.1
24
100
0
100
38
42
12
8
1.71
15303--15414
33
3.4
33
90
2
172
12
34
30
22
1.91
15390--15433
21
2.1
21
91
0
70
9
43
29
18
1.80
15454--15528
7
10.6
7
76
18
57
53
1
1
44
1.17
15636--15660
12
2.1
12
100
0
50
24
20
16
40
1.91
21407--21520
36
3.2
36
81
12
130
28
16
7
46
1.75
23586--23898
156
2.0
156
97
0
590
22
16
21
39
1.92
26449--26495
22
2.2
22
81
7
53
17
21
25
36
1.94
26367--26515
72
2.1
72
88
3
219
26
18
18
36
1.94
32143--32267
28
4.5
28
80
4
137
15
16
24
43
1.87
59882--59912
16
1.9
16
100
0
62
83
0
3
12
0.75
63328--63363
19
1.9
18
88
5
54
27
22
8
41
1.82
65893--65937
18
2.5
19
79
17
51
68
0
2
28
1.01
65906--65945
6
6.7
6
86
11
55
72
0
0
27
0.85
72310--72374
31
2.2
31
80
5
80
26
18
15
40
1.90

Tables:   1

The End!