Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011845.1 Corchorus olitorius cultivar O-4 contig11878, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31051

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4773--4821
21
2.3
21
100
0
98
40
28
12
18
1.86
5194--5295
40
2.5
42
81
6
113
36
16
15
31
1.91
8400--8491
41
2.3
39
80
10
91
52
21
8
17
1.71
8415--8491
38
2.0
40
84
7
104
51
22
9
16
1.72
8482--8545
19
3.3
19
74
10
58
53
21
9
15
1.70
18847--19221
183
2.0
183
98
0
723
26
8
31
33
1.87
19191--19239
25
2.0
25
87
0
71
34
18
32
14
1.91
19923--20175
128
1.9
131
85
7
354
38
9
1
50
1.46
27677--27721
2
22.5
2
100
0
90
51
48
0
0
1.00
27926--27952
13
2.1
13
100
0
54
7
0
48
44
1.31
28125--28260
45
3.0
44
88
7
202
52
4
14
28
1.61
28130--28268
47
3.0
47
89
6
214
51
5
13
29
1.64
30058--30186
49
2.7
48
85
5
163
27
15
6
49
1.70
30726--30772
18
2.6
18
70
12
51
25
40
21
12
1.89

Tables:   1

The End!