Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011847.1 Corchorus olitorius cultivar O-4 contig11880, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47719

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
916--1487
204
2.8
204
96
1
1037
44
8
11
35
1.71
1623--1703
39
2.0
40
90
6
130
37
4
8
49
1.55
9763--10000
126
1.9
124
89
6
369
32
12
15
39
1.84
9980--10007
12
2.3
12
100
0
56
32
7
17
42
1.77
12469--12504
18
1.9
18
88
5
54
63
8
16
11
1.49
13072--13132
30
2.0
31
87
3
88
37
18
9
34
1.83
21901--21940
16
2.7
15
88
11
64
75
0
17
7
1.03
27780--27867
37
2.6
34
86
12
112
50
6
19
23
1.72
35141--35949
331
2.4
329
81
7
902
35
14
14
35
1.87
36374--37590
331
3.7
327
79
9
1159
34
14
15
36
1.88
37587--38684
330
3.3
331
78
7
876
33
14
15
36
1.88
38451--39064
257
2.4
254
89
3
921
29
14
16
40
1.88
43311--43409
43
2.3
43
82
3
112
39
30
11
19
1.86
46930--46969
15
2.6
16
88
4
55
62
12
10
15
1.54
47511--47552
15
2.7
15
96
3
75
66
14
7
11
1.43

Tables:   1

The End!